MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Map4k4 (ENSMUSG00000026074)

Cross Reference

EMBL	AC132909, AC166238
GO	GO:0000165, GO:0004111, GO:0004674, ...show all
goslim_goa	GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name	Map4k4-007
OTTP	OTTMUSP00000068935
OTTT	OTTMUST00000127988
UniParc	UPI00054993BD
Uniprot/SPTREMBL	A0A0A6YVR7
Vega_transcript	Map4k4-007, OTTMUST00000127988
Vega_translation	179113, OTTMUSP00000068935

Definition

protein_id:ENSMUSP00000141235
translation:

IRRQLEEEQRHLEILQQQLLQEQAMLLECRWREMEEHRQAERLQRQLQQEQAYLLSLQHD
HRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDPADRAREWSHLASLKNNVSPVSRSHSF
SDPSPKFAHHHLRSQDPCPPSRSEGLSQSSDSKSEVPEPTQKAWSRSDSDEVPPRVPVRT
TSRSPVLSRRDSPLQGGGQQNSQAGQRNS

Chromosome

1

Length
Position(start - end)

5,015
39,999,894 - 40,004,910

Orient to Chromosome

plus

Link

Location : (1:39999894-40004910)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Map4k4 (ENSMUSG00000026074)
Transcript ID	ENSMUST00000191964

Reports
substitution
cSNPs	3
Insertion	19
Deletion	19
SNPs	-1kb 39995126(c.-4768C>T), 39995162(c.-4732A>G), 39995167(c.-4727G>A), 39995200(c.-4694T>C), 39995585(c.-4309A>G), 39995664(c.-4230G>A), 39995980(c.-3914T>G), 39996086(c.-3808C>T), 39996089(c.-3805C>T), 39996125(c.-3769G>C), 39996133(c.-3761A>G), 39996155(c.-3739G>A), 39996268(c.-3626G>A), 39996407(c.-3487A>G), 39996474(c.-3420G>A), 39996736(c.-3158G>A), 39997273(c.-2621C>T), 39997373(c.-2521C>T), 39997854(c.-2040C>T), 39998109(c.-1785T>C), 39998126(c.-1768C>T), 39998158(c.-1736A>G), 39998210(c.-1684G>A), 39998215(c.-1679C>T), 39998222(c.-1672C>G), 39998298(c.-1596G>A), 39998309(c.-1585G>A), 39998666(c.-1228C>T), 39998769(c.-1125G>A), 39998842(c.-1052G>T), 39998985(c.-909A>T), 39998986(c.-908A>C), 39999023(c.-871C>G), 39999086(c.-808A>G), 39999095(c.-799G>A), 39999279(c.-615C>T), 39999298(c.-596A>G), 39999323(c.-571A>G), 39999539(c.-355T>C), 39999663(c.-231G>A), 39999692(c.-202T>C), 39999701(c.-193T>C), 39999748(c.-146C>T), 39999749(c.-145A>G), 39999848(c.-46T>C), 5'UTR CDS 40003829(c.367C>T), 40003906(c.444G>A), 40004869(c.588C>T), 3'UTR INTRON 39999986(c.81+12C>T), 40000765(c.300+16A>C), 40000833(c.300+84T>C), 40000834(c.300+85C>T), 40001019(c.300+270T>C), 40001095(c.300+346C>A), 40001185(c.300+436G>T), 40001252(c.300+503G>A), 40001644(c.300+895T>C), 40001856(c.300+1107A>G), 40001954(c.300+1205C>T), 40002059(c.300+1310C>A), 40002138(c.300+1389T>C), 40002205(c.300+1456T>C), 40002238(c.300+1489C>T), 40002314(c.301-1449C>T), 40002338(c.301-1425T>A), 40002466(c.301-1297A>T), 40002601(c.301-1162T>C), 40002697(c.301-1066C>G), 40002767(c.301-996G>C), 40002814(c.301-949C>T), 40002952(c.301-811C>T), 40003001(c.301-762C>T), 40003084(c.301-679T>A), 40003416(c.301-347G>A), 40003516(c.301-247C>T), 40003576(c.301-187T>C), 40003650(c.301-113A>G), 40004282(c.525+295T>C), 40004667(c.526-140A>G), 40004727(c.526-80T>C), 40004744(c.526-63G>A), +1kb 40005197(c.287G>A), 40005292(c.382T>C), 40005780(c.870A>T), 40005829(c.919A>G), 40005936(c.1026T>C), 40006032(c.1122G>A), 40006074(c.1164C>T), 40006081(c.1171C>T), 40006202(c.1292G>A), 40006354(c.1444T>C), 40006359(c.1449T>G), 40006413(c.1503C>T), 40006596(c.1686G>A), 40006650(c.1740T>C), 40006840(c.1930T>C), 40006852(c.1942A>G), 40006855(c.1945G>A), 40006920(c.2010A>G), 40006976(c.2066G>C), 40007034(c.2124T>C), 40007188(c.2278T>A), 40007241(c.2331A>C), 40007347(c.2437A>C), 40007387(c.2477C>T), 40007400(c.2490C>G), 40007821(c.2911G>A), 40007840(c.2930A>G), 40007847(c.2937G>A), 40007859(c.2949A>G), 40007895(c.2985T>A), 40007969(c.3059G>A), 40007987(c.3077G>A), 40007995(c.3085T>C), 40008139(c.3229A>G), 40008212(c.3302C>G), 40008250(c.3340C>T), 40008254(c.3344T>C), 40008613(c.3703A>G), 40008779(c.3869A>G), 40008909(c.3999G>T), 40008949(c.4039G>A), 40009082(c.4172C>A), 40009094(c.4184A>G), 40009359(c.4449A>T), 40009424(c.4514C>T), 40009462(c.4552A>G), 40009468(c.4558T>C), 40009469(c.4559G>A), 40009574(c.4664G>A), 40009813(c.4903A>G),
Insertions	-1kb 39995547 (c.-4347_-4346insA), 39996081 (c.-3813_-3812insGT), 39997591 (c.-2303_-2302insAC), 39998251 (c.-1643_-1642insC), 39999734 (c.-160_-159insT), 5'UTR CDS 3'UTR INTRON 40001688 (c.300+948_300+951dupGTTT), 40002714 (c.301-1047_301-1046insGGT), 40004341 (c.525+354_525+355dupAT), +1kb 40005072 (c.162_163insCACA), 40005762 (c.852dupC), 40005785 (c.875_876insTC), 40006281 (c.1371_1372insAT), 40006323 (c.1413_1414insTGT), 40006394 (c.1484_1485insTT), 40006563 (c.1653_1654insTG), 40007035 (c.2125_2126insGCA), 40008502 (c.3592_3593insCCTC), 40009102 (c.4192_4193insCC), 40009558 (c.4648_*4649insT),
Deletions	-1kb 39995427 (c.-4466delT), 39996135 (c.-3758_-3757delAG), 39996138 (c.-3755_-3754delGA), 39996280 (c.-3613delT), 39997257 (c.-2636_-2633delATGC), 39998692 (c.-1201_-1197delTTTCT), 39999390 (c.-503_-499delAGTCC), 39999501 (c.-392_-386delGTTTTTT), 5'UTR CDS 3'UTR INTRON 40000435 (c.82-85_82-80delAAAAAA), 40000896 (c.300+161_300+162delCA), 40002133 (c.300+1385_300+1387delAGT), 40003077 (c.301-679delT), +1kb 40007979 (c.3070_3071delCA), 40008397 (c.3488_3494delCGGCTCT), 40008907 (c.3998delG), 40009026 (c.4117delC), 40009249 (c.4340delG), 40009318 (c.4409_4413delACAGA), 40009882 (c.4973_*4982delAAGAGAAGAG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	1
synonymous substitutions	40003906 (p.Gln148Gln), 40004869 (p.Gly196Gly),
non-synonymous substitutions	40003829 (p.Pro123Ser),
B6 transcript (ENSMUST00000191964)	IRRQLEEEQRHLEILQQQLLQEQAMLLECRWREMEEHRQAERLQRQLQQEQAYLLSLQHD HRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDPADRAREWSHLASLKNNVSPVSRSHSF SDPSPKFAHHHLRSQDPCPPSRSEGLSQSSDSKSEVPEPTQKAWSRSDSDEVPPRVPVRT TSRSPVLSRRDSPLQGGGQQNSQAGQRNS
MSMv4 transcript	IRRQLEEEQRHLEILQQQLLQEQAMLLECRWREMEEHRQAERLQRQLQQEQAYLLSLQHD HRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDPADRAREWSHLASLKNNVSPVSRSHSF SDSSPKFAHHHLRSQDPCPPSRSEGLSQSSDSKSEVPEPTQKAWSRSDSDEVPPRVPVRT TSRSPVLSRRDSPLQGGGQQNSQAGQRNS
homology	99.52 (209 / 209)

Exon Detail Report

Gene Symbol (Gene ID)	Map4k4 (ENSMUSG00000026074)
Transcript ID	ENSMUST00000191964

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CTCAAACATCTGGTCAGGCATATCTTTGGCTCTTTTTACTTAAGGGCATG TGCCATGAAATGGGGTGGTTGGGAGGAGGCGCTCACTATAGTCACAGAAGCCACCTCCAT GGGACAGTTCTCCCACATGGCAGTCCATTGCTCCCCTGCTAGGACAAGTAGGTCCTCCTG CTTAATGTGGGGCTGAAAGTATGCAGCAGGCACTGCGGCTTGTCTCTGATGGGCTTGGGT TAGGGTTTCCTGATGCCTGTGTACTAATAGGAATTGTGTAACTGCAGGGTTGTGTGTTCT CACCTCTCACCTACCCCATCCCCAGCACTGGAGCCGAAACCTCTGCTGTGCTCTGTACGA GGTTACCGTCTCCACTGTGACTCGGTGGTCGTTCTTGCCCGCTGTCACGTCATCGGCCTG CCCCTGCACTCGTGCCTGTGCACACTACACAGACACACAAGCTCACCAGCGTGGGCTTGG CCAGATTACCTGTAGAGAAGTGCCCATAGTCCATGACTCCTGACCACATCTTCCGACTGT AGCCATTATTCCAGGAACTTTTGGAGTCATTAGCAAAAGCACAAATCCTGTTTGGTTGGT TTGGGATTTTGTTTTTTTGTTTTTTTTTTTTATTTTTATCTTAAACAGATTTGGGCGTTA GTTTTTAAAAATTGCTGGTTTGTGCTTATTTAAAATGATGCCTCGCCATTTCTGTGGTGT CTGTTGTCCTTAAGAGGAAGCTAGCCTCCTTAAAGTTCCGTATTGGATGTGATGAGAGTA TAATAGCAGCAGTGCTTGAACGCCGCTGCGTGCATCACGCCAGTAAGCTAGACTACTTAC AGCTTGGAGCCTTGCAAACACCCTTGGCAGCAGGTTGTCTTCACTAAGGAGTCCAGTCCT CGGCGAGCTTGCTGCCGAGCTTCTGGAGTGCCGGTTACCCACACAGGGGACTCAGTCGCG TCCCCCCTGGATGTACTGACTGCTGGGTCATTTCTGTGTGACAGGAGTAC
1	EXON 1	39,999,894	39,999,974	-	0	81	ATCAGGCGGCAGCTAGAGGAGGAGCAGCGGCACCTGGAGATCCTGCAGCAGCAGCTGCTC CAGGAGCAGGCCATGTTACTG
	INTRON 1 - 2	39,999,975	40,000,530			556	GTAACGCCCCGTCTCTGTCCCGTTC..........CAGTGTCACCCTCTCCCTCTCCAAG
2	EXON 2	40,000,531	40,000,749	0	0	219	GAGTGCCGATGGCGGGAGATGGAGGAGCACCGGCAGGCAGAGAGGCTCCAGAGGCAGTTG CAACAAGAACAAGCATATCTCCTGTCTCTACAGCACGACCACAGGAGGCCGCACGCACAG CAGCAGCCGCCGCCCCCGCAGCAGCAGGACAGGAGCAAACCGAGCTTTCATGCTCCAGAG CCCAAGCCTCACTATGACCCTGCTGACAGAGCTCGGGAG
	INTRON 2 - 3	40,000,750	40,003,762			3,013	GTACCTGCTTTCCCTCTTGCTTACA..........TGTTTTGTTTTCTTGTAAGGTACAG
3	EXON 3	40,003,763	40,003,987	0	0	225	TGGTCCCACCTGGCATCTCTCAAGAACAATGTCTCCCCTGTCTCGAGATCCCATTCCTTC AGTGACTCTTCTCCCAAATTCGCACACCACCATCTCCGCTCTCAGGACCCATGTCCACCT TCCCGCAGTGAGGGGCTCAGTCAAAGCTCTGACTCTAAGTCGGAGGTGCCCGAGCCCACC CAAAAGGCTTGGTCTAGATCAGACAGTGACGAGGTGCCTCCAAGG
	INTRON 3 - 4	40,003,988	40,004,806			819	GTAAGGACAGACAGACAGACGCGCT..........TAACTGCTGTGTTTCCTACCTAAAG
4	EXON 4	40,004,807	40,004,910	0	-	104	GTTCCCGTGAGAACGACCTCTCGTTCCCCTGTCCTCTCCCGTCGGGATTCCCCACTGCAG GGTGGTGGACAGCAGAATAGCCAAGCAGGACAGAGAAATTCCAC
	3' upstream sequence						CAGGTAAAAAAAGAGAACTGACAGGAGGAGATGTGCTGTGGCTCCCAGTCTCTCAGAAAG TCATCTGTTGTCTGTTTGCAGAAATGTGCATCTCTAGCACTGAGGTTCTAGACCGATGTG ACATATTTTACACACTCACACACACACACACACACTCACACTCACACACACACGCAGCAG CAGCAGCGTTATTGATCAGTAGTGAGAAGCAGATTTGAATCTTGATGTGTATTGTAATTT TGAAATGTAAACTATATTTCTCTGTAAAGGTAGAGAAGGGAGAATTAAGAACAGGTTCTA AGAAACATAATTTGAGAGAGGTTTTTAGTCTAGAAGAAATTGTGAGGGTTTAGACTGAGT TAAAAGAAATCACAGCCAAGTCAGTATTCCCTCACAACCTGCCATAGACTACCATGCTAG CCAAGTGATGTCATTGCTGAGGTTTAGGGTGGCTCTGTCTGATGCAGTAGCTCTTGGCCA ATGAGGCTGAGTATGAATTTAACTTAATTAAAATGAATTAAGCTTCACCTTTTTGGTGGC TGGAGTCACGTGTTGTTAGTGGCTCTGACGTTTGCTCAGGTGTGGAGTGTGCTGTGTGTG CACTTACTGAAAACTTGTCACTGTTGCCCTGCAGATATCATTAAGTGTTTGGTAATTTGG TCATCAGTGGACCTGTGGTGTTGGCAGTGTTGGTACAAGTGCCTAGATGGATGACAGTCC AGAGTCTGCAGGCAACACTTTAATGCTGGTGACCAGAGAGATCTGGCATTCTCCTATGAC AGACAGTGTCCAGGGCACAGATTCTTCCCAGTGTATGTGTGCTATGGGTCTGACCATGGC AGGAAGCCTCACGGCTTTGCTTCCTCCACACATCAGAGTGGACTGTGGGTATCCAAGGTG TGGAAGCTGTCATAGTGGGTGAGGGCAACCTAGATACAGAAAAATTTCTGAGTAATTATT TCCAATTAAGAGTAGGGTCTATAGACAGAAGTGGTTGTAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Map4k4 (ENSMUSG00000026074)
Transcript ID	ENSMUST00000191964

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 209 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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