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Target CDS Information

Gene Symbol (Gene ID) Slc9a2 (ENSMUSG00000026062)
Cross Reference
EMBL AC154392, AK166114
Fantom G730039P03
GO GO:0005903, GO:0006814, GO:0006885, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Slc9a2-002
OTTP OTTMUSP00000068962
OTTT OTTMUST00000128064
protein_id BAE38579.1
Reactome R-MMU-382551, R-MMU-425393, R-MMU-425407, ...show all
UCSC uc007aum.1
UniParc UPI00005B21F7
Uniprot/SPTREMBL Q3TM63
Vega_transcript OTTMUST00000128064, Slc9a2-002
Vega_translation 179135, OTTMUSP00000068962
Definition protein_id:ENSMUSP00000142144
translation:
MGPRGTAHSVRAPLSWLLLLLLSLQVAVPAGALAETLLDAPRARGASSNPPSPASVVAPG
TTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGL
LLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENFGTIFWYAVVGTLW
NSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILV
FGESLLNDAVTVVLYNLFKSFCQMKTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFT
TRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMA

Chromosome 1
Length
Position(start - end)
44,587
40,681,874 - 40,726,462
Orient to Chromosome plus
Link Location : (1:40681874-40726462)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slc9a2 (ENSMUSG00000026062)
Transcript ID ENSMUST00000192345
Reports
substitution
cSNPs5
Insertion31
Deletion44
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 40718665 (p.Leu121Leu), 40718893 (p.Ala197Ala), 40718947 (p.Ile215Ile), 40719001 (p.Asn233Asn), 40726348 (p.Phe299Phe),
non-synonymous substitutions
B6 transcript
(ENSMUST00000192345)
MGPRGTAHSVRAPLSWLLLLLLSLQVAVPAGALAETLLDAPRARGASSNPPSPASVVAPG
TTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGL
LLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENFGTIFWYAVVGTLW
NSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILV
FGESLLNDAVTVVLYNLFKSFCQMKTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFT
TRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMA*
MSMv4 transcript
MGPRGTAHSVRAPLSWLLLLLLSLQVAVPAGALAETLLDAPRARGASSNPPSPASVVAPG
TTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGL
LLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENFGTIFWYAVVGTLW
NSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILV
FGESLLNDAVTVVLYNLFKSFCQMKTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFT
TRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMA*
homology100.00 (337 / 337)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slc9a2 (ENSMUSG00000026062)
Transcript ID ENSMUST00000192345
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTATTTTATACGTTTAGGGGAAACCGTGTGGGTTAACTGGGAGGCAGATG
GTTTGGTTTCGGTTCCTTTCAGTTTCTCACCGTGAGGACACCGGGACAGTGGGATCGCAG
GCAGGGCACCTGGCAATGCCCCTGCGGAAGGTCGGGCTTGGGAGAAGGGCCAGTTGGCGC
TGGGAGAATCCCGCTTTTCCAAACCGCAGTCCATCCTGTAATTAGCCGAACAAGTCCGTC
TAAGCTAGGCAAATCACTGGTTTTCCACGAAATAGTTATGTTTCTGATGCCCTCAGACAG
ATTCACCTCGAAGCCTAAAAACAGAGACTTTTTCGTCCCCAAAGCTGGGGGAGGGAAGAA
AAGTGGAGTGCACACTGTTACAAGGAGTGGAAAAGCGGAAAGACAAGGGTTCTGGGAGAG
CGTGGGAGCGCTGAGTTCTCAACCGGGAGTTTCGGTGCGCAGAGAACAGGCTGTGTTCAA
GGTGCTTTGCTCTTCCTTCTCATCTTTCCGAGGCCCTGAGAGGCTCCCCTCGGTGAGTCG
GTCTCTGCAGACCCGGCAGTGGCGAAGGCTCCCCAGTTCCTCCGCGCCCGGCGTCGCCTC
CCTGCCTGAGCCCGCGGCGCCTCCTCGCGTGCCAGCGCCCCGGGGTGTCTCCTTGCAGGA
GCCTGCGGGGGGAGGGGGCAGGGCGCGACGCGTGGGTCGCGTCGGTCCCAGCCCTGATGG
ACGGCCGACGCTGCCTCCGGGGCGGGGACAGCTCAGGCCACCGTGCGCACCGAGCACCTA
GTGCACCCACAGCTCCCGGGCTCCCAAGAACAGCGGCGCTTGGTCCGCGGGCGGGCTAGA
GAGCGGCGCGACCTTCGCCCCCGCGTCGACTGTGGGTTGCGGCAGGTGCGCGTCGCACCG
GGTCTCCGCGTCCTCCCGCCCCGCCACCGGGGCGCCGCGCCCGCCCCGCCCCGCCCCCGT
CCCCGTCCCCGCCCGCCCTCGGGCCGCCCCGGGCAGGGCCTGTAGCTGCC
1 EXON 1 40,681,597 40,682,165 - 1 569
AGGCATGGGAGGGCGGCCGGCGGCGGAGGGCGGCTGAGCAAGGCTGAGCGCGGCGGAGGG
ACCGCGCAGTGGCCTCCTGTCGCTGCGCGCTCCCCTCCGGGCCCTGCGAGGTTCACACCC
ACCGAACTTGTTGGCGACAGGGCCCAGACCCCGTGGAGGCGGTGGTGTGGTACTCTCGCA
GTCCCGTTGAGTTAGTAGTGCTGTCCCCCCCGCGATGCTCTGAGGGAACCCAGATCCTAC
ACCAGCGTCCTCTGCTGCGCTCATAGCTGCCGACCCCATGGGCCCCCGGGGCACCGCGCA
CAGCGTGCGGGCGCCACTGTCTTGGCTGCTGCTGCTGCTGCTGTCTCTGCAGGTGGCAGT
GCCGGCGGGCGCGCTGGCCGAGACCCTGCTGGACGCACCCAGGGCCAGGGGTGCCAGCTC
CAACCCGCCAAGTCCTGCCAGTGTGGTGGCCCCGGGAACGACGCCGTTCGAGGAAAGTCG
GTTGCCCGTGTTCACCCTGGATTACCCCCACGTGCAAATCCCTTTCGAGATCACTTTGTG
GATCCTACTGGCCTCCTTGGCCAAGATTG
INTRON 1 - 2 40,682,166 40,718,594 36,429
GTAAGGAACCGTACCCGTGGGTGGG..........CCCAGACTCTGTTTCTCCTAACCAG
2 EXON 2 40,718,595 40,719,058 1 0 464
GTTTTCATCTCTATCACAAGTTGCCCACAATCGTGCCGGAGAGCTGCCTTCTCATAATGG
TCGGGCTTCTGCTGGGTGGGATTATCTTCGGTGTTGATGAGAAGTCTCCCCCGGCAATGA
AGACAGATGTGTTTTTCCTATACCTCCTGCCACCCATCGTTCTGGATGCTGGCTACTTCA
TGCCAACTCGCCCCTTCTTTGAGAACTTCGGCACCATTTTCTGGTATGCTGTGGTAGGCA
CACTGTGGAATTCCATTGGCATTGGGGTGTCTTTGTTTGGCATCTGCCAGATTGAGGCAT
TTGGCCTCAGTGACATCACCCTGCTCCAGAACCTGCTCTTCGGCAGCCTGATCTCAGCTG
TGGACCCCGTGGCTGTGCTTGCTGTCTTTGAGAACATTCACGTCAACGAACAGCTCTATA
TCCTGGTTTTTGGCGAGTCTCTGCTCAACGATGCAGTCACAGTG
INTRON 2 - 3 40,719,059 40,726,207 7,149
GTGAGTGAACAGATCACAGATCACA..........ACAGTGTGCTTTCTCATCCCCTCAG
3 EXON 3 40,726,208 40,727,681 0 - 1,474
GTCCTGTACAACTTGTTCAAGTCCTTCTGCCAGATGAAAACCATCCAGACCGTAGACGTG
TTTGCTGGCATCGCTAACTTCTTCGTCGTGGGTATTGGCGGGGTGCTGATTGGCATCCTC
CTGGGATTCATAGCAGCGTTCACCACCCGTTTCACACACAACATCCGGGTCATTGAGCCA
CTCTTTGTCTTCTTGTACAGCTACTTGTCCTACATCACTGCTGAAATGTTCCACCTTTCA
GGCATCATGGCGTAAGTGGCTCACCGCTAACAGCCCCTGATTGCTTTGTTTCGTTGAACT
TAAGCATTCTAAGATATTAAGTTGACTGAGTTGTTTAAAAGAGTAGATTTTCTTATCCTG
AGAACAACTAGAATTTGATTTCTATAAAACCTTTTGTTACACCGAAATGAAAGTATTTAT
TATCCAAATTTATGCTACTGCAATGTGGAGCTGACATGGAAAAGGTGCTAAAATTAACTC
TTGAGGTTCCTATAAAATATAATCATGAATTTTATTGTTGATCTGGATCAGATGCCAACG
TCTTGAGTCTGATCCCCGTGCTCCCTGAGGGAGGCTGCAAAATATTCCAGCAAGGTTGCA
TCACGGAAACTGCCCGTTGTGTTCTAGAGGTGTTTTTGTGAGTCTAATTGAATGATCTTA
CACACAGTAGGTTTACTGGTAACAGTTTAAACCCATTCATTAGAGAAAACAATGGATATA
AGATCCTGTAATTTCAGGATAAATTTAAATAGATTTTTAGTACACAGATTTTTAAATAGA
TTATTTTAAATATGGAACTTAATTTTTTGATGAGGAGTTTAAATTATTTTGAAATAAATA
AATATTTGTATAAGTTAAATAACATTTATAAAATAACATATGATATATTATTATGTAACA
TTATATATTTGTATATAAATAATAAATAAGCAATGATTACTGTTTTGCTCACTGAGAAGA
AGGCTTTTAAAAACTTGTCCTTGTAAGATACAGATTGGTAGTCTTTGGATCACACTGGTC
TTCAGGGTGTTACTCTGAAGGAAACTAGTCAATGGAGTGTTTTCCCCAAATGATACCATT
ATATCATGGTTGCATTCTTCCTTGGGCCAGCGAAAAACACCACAGTAAATAGTAGAACTC
CTACCTTGGTTTTGCTTGACACTGAGTTGCACGCTGTAAACTGTAGTCCATGTGTCAGGG
TGTGGGAAATCTATTTAGAATTTGCTTCATAGTGTAGGCTTACTTCTTTCTGCAGCCCAC
CCACCGCCCTCTCCGACCTGCTGTAAGTGGGACCTCAGTTAAAAAGTGTTCGGGGACATG
CCTCCTGGCAGCACATTCATGTCAGAAGCAGATGGAGTCTGTGGGGCAAAGGGGCAAAGG
GAAGAAGCCGAACTCAGCGTCATAAGAGCCACGAGTTAAAGGTTGTGTGGTTTTCCCTTT
CAAAGAGAACCTAAATAAAGCAACATATTAATCC
3' upstream sequence
AGTTTGACCCAGTAATGAAACGTTCCTGGTTGCTATTCATATCACTGTGTGACTTCCAGT
GTCCTCACTGTTGTGTGAGTAGAATCGTTGAAAATGTATGATCAGCTGGTTACAAGTTCT
GCAATGGATAGTGGGCTGGGCCTGGTGACTAGTTCTAGAAACAGGTTTATAGGAACCTAA
GATTTCAGAATCCATCTCTGGACTGTTTATCATGTTTAGAATGCTCAAAGCAGCCATCTA
TAATTAGTCATTTTGTACAATGTTCAAGAGTGGAGATGGGGATCCCCGAAGACGCTGAAT
GATGGAGAAGTTAGGTGAGGGTGGAAGTGGGTGTGGGGACAATGTTAGGAAGGCCTAGAG
TATATTTGGCTTAATTCTCCCCAAATTACCACTAACTGGAGTCCAAGTATTCAACTTCAA
ACTTACAGAGGACACCTCATCCAAACTACCACATCTATATTGTACCAAAAATAATAAAAG
AGCTATTATTTTAGCTTGGGAGAGATTTCAAGAGATAAAAATTCCCATGTACAGCCATTA
TGTTCTGATGGTAGATGGAAGGGTTATTTACATCAATGCACTGATTCTCTCAGAAGTGGG
GCTCTATGTTCTAATGTGTGGTCAGCATGCTTCTCAAATCATGAGTGGGCATGGTGCTTC
TGTAGAGTACATTAACAGGTACATTGCAAGCACTCTCCTTGAGGTTCCATGTATGAACTT
CCAGGCTGTTGTTACTAATATCCCTGGGACACTGGTCAGGGCATACCCCTTATCCATATC
ATGAGAAGTGTGCATCCAGACTCTTCTTATAGAACTAACAAATTCTTTTTTTGACTTAAA
TTGCCCTGAGCTTAGAAATTATTCTCATTCTTCCTGTTAGACTCTTAGCATTAAAAACAA
ACTCTAAGTTTAATGGAAGTTACGATGCCAAGGCTGCTGAACATGCTGAGTTCTCACCAA
GAAGAGACTGTTATCCCAGGAATGCAAATAGGCAGGAGGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Slc9a2 (ENSMUSG00000026062)
Transcript ID ENSMUST00000192345
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 337 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information