MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Atp6v1h (ENSMUSG00000033793)

Cross Reference

EMBL	AC131067, AC157807
GO	GO:0000221, GO:0005765, GO:0006897, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Atp6v1h-006
OTTP	OTTMUSP00000068781
OTTT	OTTMUST00000127529
RefSeq_mRNA	NM_001310442.1
RefSeq_peptide	NP_001297371.1
UCSC	uc007afn.1
UniParc	UPI0003D7006E

Uniprot/SPTREMBL	A0A0A6YX18
Vega_transcript	Atp6v1h-006, OTTMUST00000127529
Vega_translation	178628, OTTMUSP00000068781

Definition

protein_id:ENSMUSP00000141797
translation:

MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQSSQYV
QCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCE
HLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQL
ENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRE
NAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVM
NHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS

Chromosome

Length
Position(start - end)

77,713
5,084,451 - 5,162,165

Orient to Chromosome

plus

Link

Location : (1:5084451-5162165)
/

name	Atp6v1h (ENSMUSG00000033793)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Atp6v1h note : ATPase, H+ transporting, lysosomal V1 subunit H [Source:MGI Symbol;Acc:MGI:1914864]

name	Atp6v1h (ENSMUSG00000033793)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000192847

name	Atp6v1h (ENSMUSG00000033793)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000044369

name	Atp6v1h (ENSMUSG00000033793)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194676

name	Atp6v1h (ENSMUSG00000033793)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000192029

Target CDS Information

Detail Map

Report

Polymorphisms Report

Exon Detail Report

Sequence Detail Report

name	Atp6v1h (ENSMUSG00000033793) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Atp6v1h-003 Vega_transcript:OTTMUST00000127492 Uniprot/SPTREMBL:A0A0A6YWP6 UCSC:uc007afn.1 EMBL:AC131067 EMBL:AC157807 GO:GO:0000221 GO:GO:0005765 GO:GO:0006897 GO:GO:0015991 GO:GO:0046961 GO:GO:0070062 MGI_trans_name:Atp6v1h-003 Vega_translation:178624 Vega_translation:OTTMUSP00000068762 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005764 goslim_goa:GO:0005773 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0016887 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0055085 OTTP:OTTMUSP00000068762 OTTT:OTTMUST00000127492 UniParc:UPI00053BD739
definition	note : transcript_id=ENSMUST00000192847 protein_id : ENSMUSP00000141636 translation : MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSEDKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLRILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS

name
type	misc_feature
link
xref
definition	note : contig AC157807.4 135343..165344(1)

Gene Symbol (Gene ID)	Atp6v1h (ENSMUSG00000033793)
Transcript ID	ENSMUST00000192698

Reports
substitution
cSNPs	2
Insertion	64
Deletion	70
SNPs	-1kb 5082847(c.-1604C>T), 5082903(c.-1548A>T), 5082978(c.-1473G>A), 5083033(c.-1418T>C), 5083096(c.-1355G>C), 5'UTR 5084438(c.-13T>A), CDS 5124313(c.660A>G), 5124457(c.804T>C), 3'UTR 5083170(c.-143C>T), 5083210(c.-103C>T), 5162341(c.176T>G), INTRON 5083320(c.-35+42C>T), 5083378(c.-35+100G>A), 5083525(c.-35+247C>T), 5084201(c.-34-216C>T), 5084204(c.-34-213A>C), 5084222(c.-34-195G>C), 5084245(c.-34-172A>G), 5084287(c.-34-130G>A), 5084317(c.-34-100C>T), 5084370(c.-34-47T>A), 5084658(c.113+95G>A), 5084672(c.113+109T>C), 5085023(c.113+460C>T), 5085028(c.113+465C>T), 5085035(c.113+472A>G), 5085509(c.113+946T>G), 5085889(c.113+1326A>G), 5086006(c.113+1443C>T), 5086272(c.113+1709T>C), 5086500(c.113+1937T>C), 5086503(c.113+1940G>C), 5086561(c.113+1998G>A), 5086700(c.113+2137T>C), 5086753(c.113+2190A>G), 5086755(c.113+2192A>G), 5087466(c.114-1543A>G), 5088306(c.114-703T>C), 5088365(c.114-644A>G), 5088368(c.114-641C>T), 5088435(c.114-574C>T), 5088463(c.114-546T>G), 5088609(c.114-400C>T), 5088615(c.114-394G>C), 5088967(c.114-42T>C), 5089172(c.216+61A>G), 5089275(c.216+164T>C), 5089510(c.216+399A>G), 5089544(c.216+433C>T), 5089679(c.216+568C>T), 5089686(c.216+575A>T), 5089709(c.216+598C>T), 5089877(c.216+766T>A), 5089970(c.216+859A>C), 5090026(c.216+915G>C), 5090164(c.216+1053A>G), 5090245(c.216+1134A>T), 5090248(c.216+1137C>T), 5090306(c.216+1195G>T), 5090453(c.216+1342T>C), 5090478(c.216+1367A>G), 5090528(c.216+1417A>T), 5090766(c.216+1655C>G), 5090770(c.216+1659G>C), 5090840(c.216+1729A>G), 5090896(c.216+1785C>A), 5090980(c.216+1869A>C), 5090993(c.216+1882A>G), 5091038(c.216+1927T>C), 5091105(c.216+1994A>C), 5091136(c.216+2025C>T), 5091170(c.216+2059A>T), 5091270(c.217-2093G>T), 5091321(c.217-2042A>G), 5091498(c.217-1865T>G), 5091588(c.217-1775C>G), 5091602(c.217-1761G>A), 5091670(c.217-1693T>C), 5091978(c.217-1385G>A), 5092351(c.217-1012T>C), 5092387(c.217-976C>T), 5092434(c.217-929C>T), 5092712(c.217-651G>C), 5092880(c.217-483C>T), 5092884(c.217-479C>T), 5093067(c.217-296A>C), 5093320(c.217-43G>T), 5093348(c.217-15C>T), 5093356(c.217-7C>T), 5093521(c.306+69A>G), 5093545(c.306+93A>C), 5093769(c.306+317T>C), 5093942(c.306+490C>A), 5093998(c.306+546A>T), 5094541(c.307-1074A>C), 5094545(c.307-1070C>T), 5094614(c.307-1001G>A), 5094897(c.307-718G>A), 5094960(c.307-655T>C), 5095041(c.307-574A>T), 5095171(c.307-444T>C), 5095179(c.307-436G>A), 5095186(c.307-429T>A), 5095253(c.307-362G>T), 5095263(c.307-352A>T), 5095341(c.307-274T>C), 5095468(c.307-147A>G), 5095489(c.307-126C>T), 5095879(c.420+151C>A), 5095976(c.420+248C>T), 5095977(c.420+249A>G), 5096069(c.420+341C>A), 5096296(c.420+568A>T), 5096541(c.420+813C>T), 5096671(c.420+943G>A), 5096691(c.420+963T>A), 5096851(c.420+1123T>C), 5096908(c.421-1121T>A), 5096926(c.421-1103G>A), 5097082(c.421-947G>A), 5097189(c.421-840T>C), 5097762(c.421-267A>G), 5098271(c.525+138A>G), 5098272(c.525+139C>T), 5098423(c.525+290C>T), 5098495(c.525+362A>G), 5098751(c.525+618C>T), 5098940(c.525+807C>A), 5099455(c.525+1322A>C), 5099509(c.525+1376C>T), 5099629(c.525+1496G>C), 5099646(c.525+1513G>A), 5099730(c.525+1597C>A), 5099738(c.525+1605C>A), 5099902(c.525+1769T>A), 5099982(c.525+1849G>A), 5100552(c.525+2419A>T), 5100778(c.525+2645G>A), 5101134(c.525+3001T>C), 5101188(c.525+3055G>A), 5101845(c.525+3712C>T), 5101876(c.525+3743T>C), 5102035(c.525+3902T>C), 5102098(c.525+3965C>T), 5102466(c.525+4333G>C), 5103645(c.525+5512A>G), 5103785(c.525+5652G>A), 5103942(c.525+5809G>A), 5103987(c.525+5854A>C), 5104082(c.525+5949C>T), 5104479(c.525+6346C>T), 5104882(c.525+6749G>A), 5104950(c.525+6817G>T), 5105335(c.525+7202A>G), 5105543(c.525+7410T>C), 5106104(c.525+7971G>A), 5106272(c.525+8139G>C), 5106545(c.525+8412C>G), 5106602(c.525+8469C>T), 5106843(c.525+8710T>C), 5107152(c.525+9019T>G), 5107182(c.525+9049T>C), 5107480(c.525+9347A>G), 5107738(c.525+9605C>T), 5108367(c.526-9023C>T), 5108521(c.526-8869G>C), 5108635(c.526-8755C>T), 5108650(c.526-8740A>G), 5108651(c.526-8739C>T), 5108709(c.526-8681G>A), 5108799(c.526-8591G>A), 5108815(c.526-8575C>T), 5108820(c.526-8570T>C), 5108963(c.526-8427T>C), 5108964(c.526-8426T>A), 5109107(c.526-8283C>T), 5115098(c.526-2292T>C), 5115309(c.526-2081T>C), 5115377(c.526-2013C>A), 5115443(c.526-1947T>A), 5115497(c.526-1893T>C), 5115579(c.526-1811T>C), 5115652(c.526-1738G>A), 5115720(c.526-1670A>T), 5115780(c.526-1610A>C), 5115784(c.526-1606T>C), 5115802(c.526-1588A>G), 5115818(c.526-1572C>A), 5115823(c.526-1567G>C), 5115830(c.526-1560G>A), 5115852(c.526-1538C>T), 5115872(c.526-1518T>C), 5116018(c.526-1372C>T), 5116315(c.526-1075G>C), 5116380(c.526-1010A>G), 5116465(c.526-925G>A), 5116754(c.526-636C>T), 5116852(c.526-538T>G), 5116863(c.526-527G>A), 5116955(c.526-435T>C), 5116977(c.526-413G>T), 5117057(c.526-333A>T), 5117064(c.526-326A>G), 5117082(c.526-308T>C), 5117122(c.526-268T>C), 5117137(c.526-253A>T), 5117260(c.526-130G>A), 5117370(c.526-20T>A), 5117372(c.526-18T>C), 5117675(c.623+188T>C), 5117689(c.623+202C>T), 5117695(c.623+208G>A), 5117745(c.623+258C>T), 5117759(c.623+272T>C), 5117777(c.623+290C>G), 5117791(c.623+304C>A), 5117825(c.623+338T>A), 5117842(c.623+355G>A), 5117954(c.623+467C>A), 5117964(c.623+477G>A), 5118242(c.623+755T>C), 5118266(c.623+779A>G), 5118388(c.623+901A>T), 5118391(c.623+904A>G), 5118424(c.623+937A>G), 5118752(c.623+1265C>T), 5118776(c.623+1289G>A), 5118779(c.623+1292C>T), 5118899(c.623+1412C>G), 5119044(c.623+1557C>A), 5119157(c.623+1670C>T), 5119160(c.623+1673C>T), 5119168(c.623+1681A>G), 5119304(c.623+1817T>C), 5119308(c.623+1821T>C), 5119411(c.623+1924C>T), 5119481(c.623+1994T>G), 5119541(c.623+2054T>C), 5119548(c.623+2061G>A), 5119639(c.623+2152T>C), 5119699(c.623+2212G>T), 5119941(c.623+2454T>C), 5119943(c.623+2456C>G), 5119997(c.623+2510T>C), 5120009(c.623+2522C>T), 5120013(c.623+2526T>C), 5120055(c.623+2568A>G), 5120203(c.623+2716G>C), 5120218(c.623+2731A>G), 5120254(c.623+2767G>A), 5120270(c.623+2783A>G), 5120506(c.623+3019C>T), 5120523(c.623+3036A>T), 5120571(c.623+3084G>C), 5120589(c.623+3102A>G), 5120613(c.623+3126A>G), 5121028(c.624-3249G>A), 5121067(c.624-3210A>G), 5121187(c.624-3090G>T), 5121684(c.624-2593G>A), 5121819(c.624-2458C>T), 5122819(c.624-1458A>G), 5122853(c.624-1424C>T), 5122855(c.624-1422T>G), 5122968(c.624-1309C>T), 5122971(c.624-1306A>G), 5122984(c.624-1293G>A), 5123024(c.624-1253A>G), 5123182(c.624-1095G>A), 5123268(c.624-1009A>G), 5123350(c.624-927C>T), 5123496(c.624-781C>T), 5123550(c.624-727T>C), 5123677(c.624-600C>T), 5123723(c.624-554G>A), 5124064(c.624-213C>A), 5124241(c.624-36A>G), 5124518(c.816+49G>A), 5124527(c.816+58G>T), 5124605(c.816+136G>A), 5124610(c.816+141G>A), 5124693(c.816+224C>A), 5124707(c.816+238C>G), 5124788(c.816+319G>A), 5124796(c.816+327G>A), 5124889(c.816+420T>C), 5125097(c.816+628C>T), 5125159(c.816+690T>C), 5125242(c.816+773G>A), 5125599(c.816+1130A>C), 5125607(c.816+1138G>T), 5125652(c.816+1183G>A), 5125664(c.816+1195G>A), 5125727(c.816+1258G>C), 5125981(c.816+1512T>C), 5125989(c.816+1520G>A), 5126321(c.816+1852G>T), 5126322(c.816+1853A>T), 5126363(c.816+1894T>G), 5126364(c.816+1895C>T), 5126456(c.816+1987C>A), 5126462(c.816+1993A>G), 5126481(c.816+2012G>C), 5126705(c.816+2236G>A), 5126730(c.816+2261C>T), 5126784(c.816+2315T>G), 5126809(c.816+2340C>G), 5126996(c.816+2527G>A), 5127024(c.816+2555G>A), 5127217(c.816+2748T>G), 5127252(c.816+2783A>G), 5127264(c.816+2795C>T), 5127371(c.816+2902A>G), 5127443(c.816+2974T>C), 5127595(c.816+3126G>A), 5127944(c.816+3475T>C), 5128110(c.816+3641C>T), 5128296(c.816+3827C>T), 5128348(c.816+3879T>A), 5128434(c.816+3965C>T), 5128449(c.816+3980T>A), 5128503(c.816+4034C>T), 5128655(c.816+4186G>A), 5128779(c.817-4305C>T), 5128843(c.817-4241G>T), 5129477(c.817-3607A>G), 5129774(c.817-3310G>A), 5129780(c.817-3304G>T), 5130072(c.817-3012G>A), 5130538(c.817-2546T>A), 5130563(c.817-2521C>A), 5130605(c.817-2479G>C), 5130676(c.817-2408T>C), 5130678(c.817-2406C>G), 5130771(c.817-2313T>C), 5130785(c.817-2299G>A), 5130813(c.817-2271A>G), 5130848(c.817-2236T>G), 5130870(c.817-2214C>T), 5130922(c.817-2162T>C), 5130926(c.817-2158C>T), 5131012(c.817-2072C>T), 5131210(c.817-1874C>T), 5131213(c.817-1871C>T), 5131241(c.817-1843C>T), 5131303(c.817-1781A>G), 5132968(c.817-116T>C), 5132972(c.817-112T>C), 5133301(c.995+39T>C), 5133339(c.995+77C>A), 5133444(c.995+182C>T), 5133477(c.995+215C>T), 5133694(c.995+432T>C), 5133731(c.995+469T>C), 5133849(c.995+587T>A), 5133865(c.995+603A>G), 5133870(c.995+608A>G), 5133878(c.995+616T>C), 5134992(c.996-820C>G), 5135033(c.996-779G>A), 5135113(c.996-699G>A), 5135206(c.996-606C>A), 5135345(c.996-467A>T), 5135637(c.996-175T>C), 5136558(c.1121+621T>C), 5136831(c.1121+894A>G), 5136837(c.1121+900T>C), 5137130(c.1121+1193A>G), 5137243(c.1121+1306C>T), 5137355(c.1121+1418T>C), 5137401(c.1121+1464T>A), 5137402(c.1121+1465G>T), 5137748(c.1121+1811A>G), 5138215(c.1121+2278T>G), 5138254(c.1121+2317A>G), 5138306(c.1121+2369C>T), 5138577(c.1121+2640G>A), 5138664(c.1121+2727T>G), 5138697(c.1121+2760T>G), 5139480(c.1121+3543T>C), 5139654(c.1121+3717T>C), 5139712(c.1121+3775G>A), 5139804(c.1121+3867A>C), 5139999(c.1122-3751G>A), 5140044(c.1122-3706T>C), 5140055(c.1122-3695G>A), 5140077(c.1122-3673C>G), 5140619(c.1122-3131C>T), 5142203(c.1122-1547T>C), 5142217(c.1122-1533A>C), 5142288(c.1122-1462G>A), 5142310(c.1122-1440A>G), 5142376(c.1122-1374T>C), 5142399(c.1122-1351G>A), 5142936(c.1122-814T>A), 5143069(c.1122-681G>A), 5143098(c.1122-652G>C), 5143110(c.1122-640A>G), 5143438(c.1122-312A>G), 5143563(c.1122-187A>G), 5144126(c.1223+275G>A), 5144185(c.1223+334C>T), 5144517(c.1223+666G>A), 5144711(c.1223+860C>T), 5144743(c.1223+892C>T), 5144963(c.1223+1112C>T), 5146260(c.1223+2409T>C), 5146385(c.1223+2534T>C), 5146432(c.1223+2581C>T), 5146436(c.1223+2585T>C), 5146450(c.1223+2599C>T), 5146618(c.1223+2767A>T), 5146661(c.1223+2810T>C), 5146705(c.1223+2854C>T), 5146716(c.1223+2865G>C), 5146833(c.1223+2982G>C), 5147035(c.1224-2913T>A), 5147360(c.1224-2588T>C), 5147458(c.1224-2490A>C), 5147596(c.1224-2352G>A), 5147612(c.1224-2336A>G), 5147882(c.1224-2066G>A), 5148434(c.1224-1514A>G), 5148458(c.1224-1490T>C), 5148518(c.1224-1430A>C), 5148729(c.1224-1219C>T), 5148749(c.1224-1199T>C), 5149245(c.1224-703C>G), 5149298(c.1224-650A>C), 5149462(c.1224-486T>C), 5149463(c.1224-485A>T), 5149510(c.1224-438A>G), 5149629(c.1224-319T>C), 5149695(c.1224-253G>C), 5149746(c.1224-202A>G), 5149758(c.1224-190T>G), 5149789(c.1224-159T>C), 5149792(c.1224-156A>G), 5150220(c.1337+159T>G), 5150400(c.1337+339C>A), 5150447(c.1337+386A>G), 5150479(c.1337+418G>A), 5150772(c.1337+711A>G), 5150790(c.1337+729G>A), 5150934(c.1337+873A>G), 5151182(c.1337+1121C>G), 5151334(c.1337+1273A>C), 5151352(c.1337+1291T>G), 5151629(c.1337+1568G>A), 5151828(c.1337+1767G>A), 5151903(c.1337+1842T>C), 5152152(c.1337+2091A>G), 5152481(c.1337+2420T>C), 5152486(c.1337+2425A>G), 5152487(c.1337+2426A>C), 5152490(c.1337+2429C>T), 5152491(c.1337+2430A>G), 5152738(c.1337+2677A>C), 5152949(c.1337+2888T>C), 5154144(c.1337+4083T>C), 5154393(c.1337+4332A>C), 5154829(c.1337+4768G>A), 5155043(c.1337+4982G>C), 5155045(c.1337+4984G>T), 5155240(c.1337+5179A>G), 5155479(c.1337+5418T>C), 5155726(c.1337+5665C>T), 5155818(c.1337+5757T>C), 5156199(c.1338-5906T>C), 5156610(c.1338-5495T>A), 5156618(c.1338-5487C>T), 5156622(c.1338-5483A>G), 5157960(c.1338-4145G>A), 5158117(c.1338-3988G>T), 5158119(c.1338-3986T>G), 5158130(c.1338-3975A>G), 5158557(c.1338-3548A>G), 5158911(c.1338-3194A>G), 5159073(c.1338-3032G>T), 5159179(c.1338-2926G>A), 5159834(c.1338-2271C>T), 5159874(c.1338-2231A>G), 5160121(c.1338-1984G>T), 5160483(c.1338-1622T>C), 5160671(c.1338-1434A>G), 5160872(c.1338-1233G>T), 5160938(c.1338-1167A>G), 5160981(c.1338-1124C>T), 5161568(c.1338-537G>T), 5161865(c.1338-240G>T), +1kb 5162601(c.436T>G), 5162978(c.813T>C), 5163327(c.1162T>C), 5163414(c.1249C>T), 5163415(c.1250A>G), 5163425(c.1260C>G), 5163696(c.1531C>T), 5163947(c.1782T>C), 5164297(c.2132T>G), 5164481(c.2316T>C), 5164612(c.2447G>T), 5164616(c.2451T>G), 5164617(c.2452T>G), 5164838(c.2673G>A), 5164955(c.2790T>C), 5165018(c.2853T>G), 5165028(c.2863A>G), 5165071(c.2906G>A), 5165459(c.3294T>A), 5165585(c.3420T>A), 5165786(c.3621G>A), 5165812(c.3647T>C), 5166105(c.3940T>C), 5166148(c.3983G>A), 5166504(c.4339G>A), 5166648(c.4483C>T), 5166884(c.4719G>A), 5167377(c.*5212C>T),
Insertions	-1kb 5082615 (c.-1836_-1835insC), 5'UTR CDS 3'UTR INTRON 5086780 (c.114-2221_114-2220dupAA), 5088140 (c.114-861dupA), 5089644 (c.216+533dupA), 5090042 (c.216+931_216+932insCAGAGT), 5090202 (c.216+1097dupT), 5090523 (c.216+1412_216+1413insC), 5091332 (c.217-2030dupA), 5092946 (c.217-413dupT), 5093549 (c.306+101dupA), 5094092 (c.306+640_306+641insTTTTGT), 5094516 (c.306+1072_306+1074dupTTC), 5098592 (c.525+459_525+460insA), 5099311 (c.525+1178_525+1179insGATTT), 5103673 (c.525+5541_525+5542insTT), 5107320 (c.525+9187_525+9188insGAC), 5115610 (c.526-1779_526-1778dupAA), 5116428 (c.526-959dupT), 5116698 (c.526-683dupT), 5116706 (c.526-683dupT), 5116978 (c.526-412_526-411insTGT), 5118233 (c.623+746_623+747insTTAG), 5119678 (c.623+2192_623+2193insAA), 5120329 (c.623+2848dupT), 5120335 (c.623+2848dupT), 5120394 (c.623+2907_623+2908insGAAA), 5120490 (c.623+3004_623+3005dupAG), 5121962 (c.624-2315_624-2314insC), 5124082 (c.624-193_624-192insAGCAGT), 5124645 (c.816+177_816+178insTTT), 5124889 (c.816+421dupC), 5125486 (c.816+1017_816+1018insT), 5125887 (c.816+1418_816+1419insA), 5127701 (c.816+3233dupA), 5128472 (c.816+4004_816+4005dupGG), 5130483 (c.817-2597_817-2595dupAGA), 5130634 (c.817-2439dupT), 5131514 (c.817-1568_817-1567insTGGT), 5131659 (c.817-1426_817-1425dupCT), 5132010 (c.817-1067dupC), 5134111 (c.995+850_995+851insTA), 5135661 (c.996-150_996-149dupAG), 5136123 (c.1121+195dupT), 5136691 (c.1121+769_1121+772dupATTA), 5136775 (c.1121+838dupT), 5136779 (c.1121+843dupT), 5138122 (c.1121+2189dupT), 5138359 (c.1121+2430_1121+2431dupAA), 5139883 (c.1122-3865_1122-3861dupCCCTT), 5141394 (c.1122-2348dupA), 5143666 (c.1122-83_1122-82insGAGT), 5145169 (c.1223+1319dupG), 5146401 (c.1223+2549_1223+2550dupTC), 5148453 (c.1224-1495_1224-1494insA), 5151146 (c.1337+1086dupG), 5155927 (c.1337+5876dupG), 5155937 (c.1337+5876dupG), 5157917 (c.1338-4188_1338-4187insC), 5158242 (c.1338-3862dupG), 5159049 (c.1338-3055_1338-3054insTG), 5159807 (c.1338-2298_1338-2297insC), 5160735 (c.1338-1363_1338-1362dupCC), 5161329 (c.1338-768dupA), +1kb 5164517 (c.2352_2353insATCAT),
Deletions	-1kb 5'UTR CDS 3'UTR INTRON 5083742 (c.-35+479_-35+481delTTT), 5087773 (c.114-1234delC), 5089767 (c.216+657_216+658delTG), 5090101 (c.216+991delT), 5090345 (c.216+1243delT), 5090923 (c.216+1814_216+1815delGT), 5091042 (c.216+1939delT), 5091631 (c.217-1725_217-1721delACCTG), 5092870 (c.217-492delT), 5093203 (c.217-159_217-158delTA), 5094135 (c.306+684_306+686delTTG), 5096733 (c.420+1006_420+1010delCCCCA), 5099777 (c.525+1656delA), 5102186 (c.525+4055delT), 5103926 (c.525+5797_525+5800delCTCT), 5106906 (c.525+8774_525+8780delTTTCTCT), 5107934 (c.526-9453_526-9451delGAG), 5108977 (c.526-8412_526-8411delAA), 5115179 (c.526-2190_526-2184delTTTTTTT), 5116666 (c.526-723delA), 5117031 (c.526-350delT), 5117039 (c.526-350delT), 5118318 (c.623+832delG), 5118469 (c.623+996delT), 5118789 (c.623+1304delT), 5118837 (c.623+1351delC), 5118850 (c.623+1366delA), 5118852 (c.623+1366delA), 5119020 (c.623+1543_623+1544delGT), 5119258 (c.623+1775_623+1777delCTT), 5122044 (c.624-2224_624-2222delAAA), 5122052 (c.624-2224_624-2222delAAA), 5123474 (c.624-796delA), 5123749 (c.624-527_624-525delTTT), 5123756 (c.624-520delC), 5123917 (c.624-359_624-358delTT), 5123931 (c.624-345delC), 5124505 (c.816+53_816+54delGT), 5125331 (c.816+865delT), 5128375 (c.816+3907delC), 5129321 (c.817-3754_817-3750delTTTTT), 5130735 (c.817-2348delT), 5130755 (c.817-2328_817-2327delCT), 5131174 (c.817-1907delT), 5135522 (c.996-285_996-284delTA), 5136452 (c.1121+523delA), 5139028 (c.1121+3092_1121+3093delAT), 5139655 (c.1121+3753_1121+3754delCA), 5142442 (c.1122-1306delA), 5142696 (c.1122-1047delA), 5143053 (c.1122-696delG), 5145133 (c.1223+1283delA), 5146401 (c.1223+2560_1223+2561delAA), 5147665 (c.1224-2280_1224-2274delACTGTGT), 5149453 (c.1224-492_1224-489delTTGC), 5149778 (c.1224-167delC), 5152960 (c.1337+2903delT), 5154424 (c.1337+4375_1337+4380delAACCCT), 5155084 (c.1337+5036_1337+5041delTTGTTG), 5155539 (c.1337+5480delC), 5155991 (c.1337+5931delC), 5156300 (c.1338-5796delT), 5156593 (c.1338-5497_1338-5495delTTT), 5156801 (c.1338-5302_1338-5301delTG), 5158157 (c.1338-3947_1338-3946delCT), 5158506 (c.1338-3585_1338-3584delAA), +1kb 5162963 (c.799delT), 5163621 (c.1457_1462delTCTCTC), 5164066 (c.1902_1904delCTT), 5166557 (c.4393_*4397delTTTTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	5124313 (p.Gln220Gln), 5124457 (p.Leu268Leu),
non-synonymous substitutions
B6 transcript (ENSMUST00000192698)	MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQSSQYV QCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCE HLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQL ENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRE NAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVM NHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS*
MSMv4 transcript	MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQSSQYV QCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCE HLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQL ENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRE NAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVM NHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS*
homology	100.00 (466 / 466)

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA AATGTGGTACATCTACACAATGGAGCTAAAGGGATCTGCAACCCTATAGGTGGATCAACA TTATGAACTAACCAATATCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGG CCTAGTCGGCCATCACTGCAAAGAGAGGCCCATATAAAGGCAAACTTTATATGCCCCAGT ACAGGGGAACGCCAGGGCCAAAAAGTGGGAGAGGGTGGGTAAGGGAGTGGGGGGGGGGAG GGTATGGGGGACTTTTGGGATAGCACTGGAAATGTAAATGAGGAAAATACCTAATAAAAA TATTAAAAATTAAAAGATTGCCCAGCCAACTATAAAAGGGGCTGCTTGGGACCTCCTCTC TCTCTTAAGCTCTCACCTTTCTTACTCCTCTCTAGCCCTCCTTCTCTCCCTTCCCCCTCT CTCCACTTGGCTATGGCCGGCCCCTCTCTTTCTTTTATCTTCTCTTTTTCTCTTTATCTT CCTACAATAAAGCTCTAAATTCATAGACTGTCTCTGTTCATCATATAAGCCTAGAGAAAA ATGAAGTTAGGTAAACAATGAATAACTTTTTCTGAGACATGTATTACTGGTGGGTCTACA TATACTTATACCATGGGTCTATGATTCATTTCTCAGTCTGAGTTTTATGCTTAAAATCGG AGTATGAATGCCTGGCCCGCTGAGATGTTTAATTCAAACTAACCCAAACCACTCAAAGGT CATAAACCAAGCTTCTTCAAAGATTTTTGGCTTTTTGGCACCAGTGGCCTGCAGAGTGGC GAGCTCTGCCAGTTTGAAGTGACCAAGTTAAGTGGCCTGGGAAAGGCCACTTGGTGCGCG GTCCAGCAGTTTTGGGCGCTCTCGGCTTCCGCCCTCAGCTGCGGTCACGTGCCGCTGCTC ACGTGCCAGACGCTGCTGTCACTTCGTAGCTGTTCCGGCTTCCTCTGAGT
1	EXON 1	5,083,154	5,083,278	-	-	125	GAGGCTCGCAACGTCTTCCACGGAGTCGCCTTCGTTCTGCTCTGGGTCTCCCGTGGTCAC TGAGACCTCGGAGCTCGACCGGCGCCTGCCCGCCCGTGCGGCCCTCACTCCCCGAGGCTA TCCAG
	INTRON 1 - 2	5,083,279	5,084,416			1,138	GTGAGGCCGCCTGGGGTCCCTCCCC..........CTGCTATCCTGTTTTTATCTTGAAG
2	EXON 2	5,084,417	5,084,563	-	2	147	GTCTGTGGGAAACATTCAAAGACATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGC TGTGGATGCTGCTGTCCCAACTAACATCATTGCGGCCAAGGCTGCTGAAGTTCGTGCCAA CAAAGTGAACTGGCAGTCTTATCTTCA
	INTRON 2 - 3	5,084,564	5,089,008			4,445	GTGCGTACTGGTTTGTTGTGAGTCA..........AGAATAATTCATTCTTACTTTCTAG
3	EXON 3	5,089,009	5,089,111	2	0	103	GGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTTGAAATGAAAAGAAG TTCCGAGGACAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAG
	INTRON 3 - 4	5,089,112	5,093,362			4,251	GTAATCCTTACTTTTATTTTATAAT..........ATAACATTAATTTGATGTTTTGCAG
4	EXON 4	5,093,363	5,093,452	0	0	90	TGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTAC ATACTAACCATGGTTGACGATATGCTGCAG
	INTRON 4 - 5	5,093,453	5,095,614			2,162	GTGAGTGTGATATACTAACCATGGT..........CATTATGTGCTTGGTTTTCTTTTAG
5	EXON 5	5,095,615	5,095,728	0	0	114	GAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCC TGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATG
	INTRON 5 - 6	5,095,729	5,098,028			2,300	GTAAATTTTGAATTGATCACATTCT..........AGATGTATTTCTTATTCATTTTCAG
6	EXON 6	5,098,029	5,098,133	0	0	105	GCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGAC TTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAG
	INTRON 6 - 7	5,098,134	5,117,389			19,256	GTAACAGAAATTTCCTTTATTATCC..........AACACAGCACACTTTTCCTGTGTAG
7	EXON 7	5,117,390	5,117,487	0	2	98	AGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAG TACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTG
	INTRON 7 - 8	5,117,488	5,124,276			6,789	GTGAGTGAGTGCCCTTTACTTTTAT..........AAATGTTTTCTCTGTTCTTTTTCAG
8	EXON 8	5,124,277	5,124,469	2	0	193	TATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAGCTTCAATACCAAATGATTTTTTC AATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCAT TCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCT CGCAGCATTCCGG
	INTRON 8 - 9	5,124,470	5,133,083			8,614	GTAAGTGCTCAGTGAAGGAGATTGT..........CTTCATGTCTCTTTGTCTAACTCAG
9	EXON 9	5,133,084	5,133,262	0	2	179	AATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTGGCTATGATT CAATGCAAAGTACTGAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATGAAGAT ATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTAG
	INTRON 9 - 10	5,133,263	5,135,811			2,549	GTGTGTTATCATCTTCATCATTGTC..........CTGGAATTTTAAAATAATTTTATAG
10	EXON 10	5,135,812	5,135,937	2	2	126	CTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGATTGGAATGGAGCCCTGTACA CAAGTCTGAGAAATTTTGGAGAGAAAATGCCGTGAGGTTGAATGAGAAGAACTATGAACT CTTGAA
	INTRON 10 - 11	5,135,938	5,143,749			7,812	GTAAGTTAGGATCCCATGTTCTGCT..........TATGTTGGAATTAAATTTATTTCAG
11	EXON 11	5,143,750	5,143,851	2	2	102	AATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTCTTAGCTGTTGCTGCTCA CGATGTTGGAGAATATGTCCGGCATTATCCCCGGGGAAAACG
	INTRON 11 - 12	5,143,852	5,149,947			6,096	GTAAAAGACAAGGACAAACCTATGT..........TCACCAAGTCTTTTCTGTTCTGTAG
12	EXON 12	5,149,948	5,150,061	2	2	114	GGTTATTGAGCAGCTTGGTGGAAAGCAGTTGGTGATGAACCACATGCACCATGAAGACCA GCAGGTTCGCTACAATGCTCTTCTGGCCGTGCAGAAGCTCATGGTGCACAACTG
	INTRON 12 - 13	5,150,062	5,162,104			12,043	GTATGTCTTGGTGTCTATCTCACCT..........ATGTTACCATGTTCTTGTTTTCTAG
13	EXON 13	5,162,105	5,162,419	2	-	315	GGAATATCTTGGTAAACAACTACAGTCAGAGCAGCCTCAGACTGCTGCTGCTCGGAGCTG AGCTGACCTGTTCAGCCTTTCTGCACTTCCCATGGACCAGTGGAGTGAGAACCTCAGTCT TTAGGGTTAAAAGCAAATAGTTTTTAATTTAATGATTACTTCTTTTCTGTTGTATAGCTT TTCCCTATGGTAATTCCTGGGAGAATAAAAGTGTTTGCTTGTTAAATTGTATAAAAGTAG ATACTGCCTGTATTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTATTTA TTGTCCTCTGAAAAT
	3' upstream sequence						GAATATAATTAAAGGATTCTCACTCCAAACATGTTCTTAAATTTTGCTTATTCCTATTGT GGACTTTGAATAAACATCATTTATTTCAAATAAAAATTGGGAGAAGTGTTCCCAGGTGAT GATGAGAAGTAAATGTTTTGAAATGATCATCTCCATCCCCCTCCCCCTCCCCCTCTCTCT GGCTTTTGCTCTCACTCTCTCTTACTCTTTCACTCATACGGACACACACATATGCACACA TACATTCTACACCTTCAAGACATTACATAATAACAGGTATGTCCTGAGAAATACATTTTT TGGGCAATTTAGTCACTTTGCAAACATTACAGAATATAGGTACATAAGCCTGCTCTTGAT TTGCCCTCTTGATGTAGTGAAGACAGTAAAAGGTGGATGAGGCTGTTGCTGTCAAAATAT GGGAGATTATTTCACAGTAAACTTTAGGAGTACACTTTAATATAGTAACAATAAGTAAAT AGACACATGGTTATTACCACTACCCACTGTAGTGTACTATACATTGTTCTGTATTCTTTT TTTCTTTTTTTTTTTTTTCTTTTTTTGTATTCTTATACCACTGCGAGTCAGCACTTAACT CTCATTATCAGCAGCATCACACAGGTGAGCAAGACCAAGTGCTCCAGTACCAGTATCTAC AACATTGCTGTGTTTAGAACATTTTGCACCGTTGTGATTTTTATGGCATTATCATGGTAT ATGCAGTGTGTTATTCATGAATGACTGTGAAGTTAAAAAATTTAAACCTTGAATAAATTT TGTTAGACTTTGTATATTTTATTTCTTTTAGACTTTAAAAAGATCTATTTTTTATGAAAC TAAAATTTAATAATATAAACATCACACTAAAGTTGGACAAGGCAAACTAAAAGAAGGAAA AGAGCCCCAAAGAAAGCACAAAACTCAGAGACCCATTTTTTCATGTACTTGGAACTCCCA TAAAAACACTAAACTGAAAGCTATAATATATACGTGAAGG..........

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 466 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information

name
type	STS
link
xref	UniSTS_NUM:207123 UniSTS:AU022349
definition	note : map_weight=1 standard_name : AU022349