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Target CDS Information

Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Cross Reference
EMBL AC131067, AC157807
GO GO:0000221, GO:0005765, GO:0006897, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Atp6v1h-003
OTTP OTTMUSP00000068762
OTTT OTTMUST00000127492
UCSC uc007afn.1
UniParc UPI00053BD739
Uniprot/SPTREMBL A0A0A6YWP6
Vega_transcript Atp6v1h-003, OTTMUST00000127492
Vega_translation 178624, OTTMUSP00000068762
Definition protein_id:ENSMUSP00000141636
translation:
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLRILTKLLEVSD
DPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVH
NWEYLGKQLQSEQPQTAAARS

Chromosome 1
Length
Position(start - end)
77,713
5,084,451 - 5,162,165
Orient to Chromosome plus
Link Location : (1:5084451-5162165)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000192847
Reports
substitution
cSNPs2
Insertion69
Deletion76
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 5124313 (p.Gln238Gln), 5124457 (p.Leu286Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000192847)
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLRILTKLLEVSD
DPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVH
NWEYLGKQLQSEQPQTAAARS*
MSMv4 transcript
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLRILTKLLEVSD
DPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVH
NWEYLGKQLQSEQPQTAAARS*
homology100.00 (442 / 442)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000192847
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATTTTCATTTTCTTTTAACCTTTCTTCTGCTTGTGCCAATTAGATGAAAT
AACATCAAAGGACAGGTCTAGAGAATTAAATGCAGAGTCTACCACATAATGATCATTATC
AGGAGATGTGCTGTGGCTGAGGAACAACTGCAGTCCCCAGTGCTAGCTAACTTACTTGGG
CAAGTTTTCTGGTTTTGCATCATTTATTTCTGAGTTTTGCCAATTACTTCTTTAACACAG
ACACAAGTCCATGCCTCTCCATACCAGTAACCTTTTAAGAGCTGCTTCTATTAATAGATA
AGAGGATTTGCTGTCTTACTCTGTACATTCTGAAAATAAATATACAACACTGAATAGGAG
AAATGTCACTCTGGAAAGTAAAATTGACTAATGGCAGAAACTCACACTTGGGAAACTCAC
TTTAGGAAGCTATATATTTTAAAATAGCATCTCTTAGGTCTTTAATATTCATGTTCCTAT
AGAAGTTTATCATTATTTTATAGCAATATTTTTAGAAAGAAGTCTATATTTTCTTCCACA
ATTATTTAGCATAAAATATTTACATCAGAGAAAAACATTCAAGAATTAATAGCAATAGCT
AAAGAAACTAAGTATGTAGGTTTTCTGCTTTTTAAAAACATATCACCTAAAACCAAACAG
CCAGCACTATGGGAGTGTAGCTCAGTGACTAAGTGCCTGCTTAGCATGCCTGAAACCAAG
ACTCTAGTCTCAAGCACAAAAGCATAATAAATAAACAAACCACACAACCACTAAAAACAA
AACACACACTCAAAAAGCAATGGTGAAACACAGCTGTTTAGAATGGAGAAAACTGGATTC
CAGGGAGTTTTCAAATTTTTAGGTTTCCTGTAAATTATTCCAAAAGTATTCTTAATAAAT
CATCAATAATCTACCATGATACAACTGGCTACTGCCTTAATATTCTTCACAGATTAATCC
TTTCCCTGCCAAAGACAGTGGGTCTTGTGAAGATCATCTTACCTTGACAC
1 EXON 1 5,070,018 5,070,144 - - 127
CAGTCACGGCTTGAGATCCCTCTTTATCTTCTGTGTCTTGGTCAATACTGGGATTATAAT
CTTTCTCTGCTCTGAAGAGGGGCAGCAACTGTGTCCGTGCAGCCTGCCTGGTAAGATGCT
CTTCTAG
INTRON 1 - 2 5,070,145 5,084,416 14,272
GTACCCTTGGTTTTCTTGGGAAAGG..........CTGCTATCCTGTTTTTATCTTGAAG
2 EXON 2 5,084,417 5,084,563 - 2 147
GTCTGTGGGAAACATTCAAAGACATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGC
TGTGGATGCTGCTGTCCCAACTAACATCATTGCGGCCAAGGCTGCTGAAGTTCGTGCCAA
CAAAGTGAACTGGCAGTCTTATCTTCA
INTRON 2 - 3 5,084,564 5,089,008 4,445
GTGCGTACTGGTTTGTTGTGAGTCA..........AGAATAATTCATTCTTACTTTCTAG
3 EXON 3 5,089,009 5,089,111 2 0 103
GGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTTGAAATGAAAAGAAG
TTCCGAGGACAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAG
INTRON 3 - 4 5,089,112 5,093,362 4,251
GTAATCCTTACTTTTATTTTATAAT..........ATAACATTAATTTGATGTTTTGCAG
4 EXON 4 5,093,363 5,093,452 0 0 90
TGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTAC
ATACTAACCATGGTTGACGATATGCTGCAG
INTRON 4 - 5 5,093,453 5,095,614 2,162
GTGAGTGTGATATACTAACCATGGT..........CATTATGTGCTTGGTTTTCTTTTAG
5 EXON 5 5,095,615 5,095,728 0 0 114
GAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCC
TGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATG
INTRON 5 - 6 5,095,729 5,098,028 2,300
GTAAATTTTGAATTGATCACATTCT..........AGATGTATTTCTTATTCATTTTCAG
6 EXON 6 5,098,029 5,098,133 0 0 105
GCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGAC
TTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAG
INTRON 6 - 7 5,098,134 5,101,069 2,936
GTAACAGAAATTTCCTTTATTATCC..........TACTAAGTCATTTATTTTGTAATAG
7 EXON 7 5,101,070 5,101,123 0 0 54
AAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGAT
INTRON 7 - 8 5,101,124 5,117,389 16,266
GTAAGTATGTCCCTTCCAATTGACT..........AACACAGCACACTTTTCCTGTGTAG
8 EXON 8 5,117,390 5,117,487 0 2 98
AGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAG
TACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTG
INTRON 8 - 9 5,117,488 5,124,276 6,789
GTGAGTGAGTGCCCTTTACTTTTAT..........AAATGTTTTCTCTGTTCTTTTTCAG
9 EXON 9 5,124,277 5,124,469 2 0 193
TATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAGCTTCAATACCAAATGATTTTTTC
AATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCAT
TCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCT
CGCAGCATTCCGG
INTRON 9 - 10 5,124,470 5,133,083 8,614
GTAAGTGCTCAGTGAAGGAGATTGT..........CTTCATGTCTCTTTGTCTAACTCAG
10 EXON 10 5,133,084 5,133,262 0 2 179
AATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTGGCTATGATT
CAATGCAAAGTACTGAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATGAAGAT
ATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTAG
INTRON 10 - 11 5,133,263 5,143,749 10,487
GTGTGTTATCATCTTCATCATTGTC..........TATGTTGGAATTAAATTTATTTCAG
11 EXON 11 5,143,750 5,143,851 2 2 102
AATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTCTTAGCTGTTGCTGCTCA
CGATGTTGGAGAATATGTCCGGCATTATCCCCGGGGAAAACG
INTRON 11 - 12 5,143,852 5,149,947 6,096
GTAAAAGACAAGGACAAACCTATGT..........TCACCAAGTCTTTTCTGTTCTGTAG
12 EXON 12 5,149,948 5,150,061 2 2 114
GGTTATTGAGCAGCTTGGTGGAAAGCAGTTGGTGATGAACCACATGCACCATGAAGACCA
GCAGGTTCGCTACAATGCTCTTCTGGCCGTGCAGAAGCTCATGGTGCACAACTG
INTRON 12 - 13 5,150,062 5,162,104 12,043
GTATGTCTTGGTGTCTATCTCACCT..........ATGTTACCATGTTCTTGTTTTCTAG
13 EXON 13 5,162,105 5,162,340 2 - 236
GGAATATCTTGGTAAACAACTACAGTCAGAGCAGCCTCAGACTGCTGCTGCTCGGAGCTG
AGCTGACCTGTTCAGCCTTTCTGCACTTCCCATGGACCAGTGGAGTGAGAACCTCAGTCT
TTAGGGTTAAAAGCAAATAGTTTTTAATTTAATGATTACTTCTTTTCTGTTGTATAGCTT
TTCCCTATGGTAATTCCTGGGAGAATAAAAGTGTTTGCTTGTTAAATTGTATAAAA
3' upstream sequence
GTAGATACTGCCTGTATTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTA
TTTATTGTCCTCTGAAAATGAATATAATTAAAGGATTCTCACTCCAAACATGTTCTTAAA
TTTTGCTTATTCCTATTGTGGACTTTGAATAAACATCATTTATTTCAAATAAAAATTGGG
AGAAGTGTTCCCAGGTGATGATGAGAAGTAAATGTTTTGAAATGATCATCTCCATCCCCC
TCCCCCTCCCCCTCTCTCTGGCTTTTGCTCTCACTCTCTCTTACTCTTTCACTCATACGG
ACACACACATATGCACACATACATTCTACACCTTCAAGACATTACATAATAACAGGTATG
TCCTGAGAAATACATTTTTTGGGCAATTTAGTCACTTTGCAAACATTACAGAATATAGGT
ACATAAGCCTGCTCTTGATTTGCCCTCTTGATGTAGTGAAGACAGTAAAAGGTGGATGAG
GCTGTTGCTGTCAAAATATGGGAGATTATTTCACAGTAAACTTTAGGAGTACACTTTAAT
ATAGTAACAATAAGTAAATAGACACATGGTTATTACCACTACCCACTGTAGTGTACTATA
CATTGTTCTGTATTCTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTGTATTCTTATACCAC
TGCGAGTCAGCACTTAACTCTCATTATCAGCAGCATCACACAGGTGAGCAAGACCAAGTG
CTCCAGTACCAGTATCTACAACATTGCTGTGTTTAGAACATTTTGCACCGTTGTGATTTT
TATGGCATTATCATGGTATATGCAGTGTGTTATTCATGAATGACTGTGAAGTTAAAAAAT
TTAAACCTTGAATAAATTTTGTTAGACTTTGTATATTTTATTTCTTTTAGACTTTAAAAA
GATCTATTTTTTATGAAACTAAAATTTAATAATATAAACATCACACTAAAGTTGGACAAG
GCAAACTAAAAGAAGGAAAAGAGCCCCAAAGAAAGCACAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000192847
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 442 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information