MoG+ -Mouse Genome database with high added value-

Tutorials are available here.

BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Sema4c (ENSMUSG00000026121)

Cross Reference

EMBL	AC084391
GO	GO:0005515, GO:0005615, GO:0032874, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Sema4c-005
OTTP	OTTMUSP00000022846
OTTT	OTTMUST00000049353
UniParc	UPI0000F22056
Uniprot/SPTREMBL	A0A0A6YXK9
Vega_transcript	OTTMUST00000049353, Sema4c-005
Vega_translation	178986, OTTMUSP00000022846

Definition

protein_id:ENSMUSP00000142034
translation:

MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGA

Chromosome

1

Length
Position(start - end)

1,639
36,554,400 - 36,556,040

Orient to Chromosome

minus

Link

Location : (1:36554400-36556040)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000193382

Reports
substitution
cSNPs	0
Insertion	6
Deletion	9
SNPs	+1kb 36557936(c.-1896A>G), 36558497(c.-2457T>C), 36558524(c.-2484A>G), 36559139(c.-3099A>G), 36559170(c.-3130G>A), 36559202(c.-3162A>G), 36559205(c.-3165T>C), 36559302(c.-3262T>C), 36559612(c.-3572T>C), 36560042(c.-4002G>A), 36560115(c.-4075G>T), 36560121(c.-4081T>G), 36560128(c.-4088T>G), 36560523(c.-4483A>G), 36561381(c.-5341T>C), 36561624(c.-5584C>T), 36561979(c.-5939C>G), 36562073(c.-6033T>C), 36562231(c.-6191G>A), 5'UTR 36556874(c.-109T>C), CDS 3'UTR INTRON 36554512(c.110-109C>T), 36554538(c.110-135G>C), 36554875(c.110-472C>T), 36554930(c.110-527A>G), 36555011(c.110-608T>C), 36555034(c.110-631T>G), 36555213(c.109+719T>C), 36555345(c.109+587T>G), 36555470(c.109+462A>G), 36555638(c.109+294G>C), 36555663(c.109+269G>C), 36555841(c.109+91A>C), 36556123(c.-37-46C>T), 36556362(c.-37-285T>G), 36556761(c.-38+42C>T), 36556957(c.-164-28T>C), 36557049(c.-164-120T>G), -1kb 36549535(c.4865G>A), 36549668(c.4732T>C), 36549857(c.4543G>A), 36550187(c.4213G>A), 36550405(c.3995A>G), 36550440(c.3960T>G), 36550806(c.3594G>A), 36550853(c.3547T>C), 36550860(c.3540T>C), 36550929(c.3471T>C), 36551075(c.3325A>G), 36551260(c.3140T>C), 36551261(c.3139A>G), 36551306(c.3094G>A), 36551522(c.2878C>T), 36551777(c.2623G>A), 36551916(c.2484C>T), 36552102(c.2298A>G), 36552203(c.2197A>G), 36552616(c.1784G>T), 36552632(c.1768G>A), 36552859(c.1541A>G), 36552916(c.1484T>G), 36553193(c.1207A>G), 36553194(c.1206C>T), 36553221(c.1179G>A), 36553324(c.1076A>G), 36553592(c.808A>G), 36553725(c.675C>T), 36553758(c.642T>C), 36553772(c.628T>G), 36553874(c.526T>C), 36554054(c.346A>G), 36554067(c.333A>G),
Insertions	+1kb 36560129 (c.-4090_-4089insGTGG), 36560556 (c.-4519_-4517dupAAA), 5'UTR CDS 3'UTR INTRON 36555428 (c.109+503dupC), 36555694 (c.109+237_109+238insGACAGACA), 36556375 (c.-37-299dupG), -1kb 36553359 (c.1040_1041insC),
Deletions	+1kb 36558825 (c.-2787_-2786delAA), 36559202 (c.-3163delT), 36559667 (c.-3631_-3628delTTGT), 36560318 (c.-4279delT), 5'UTR CDS 3'UTR INTRON 36554790 (c.110-390_110-388delTGG), 36557312 (c.-165+47delC), -1kb 36549505 (c.4892_4894delGGT), 36553401 (c.995_998delACTT), 36553406 (c.990_993delTACT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000193382)	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGA
MSMv4 transcript	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGA
homology	100.00 (37 / 37)

Exon Detail Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000193382

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCGCCTCAGGGCTTGAAGGCACACTTCACCAGGTGAGCGCAGTTCGTGCA GTTCCCGGTGGCAACGCCTGGAGTCCCTCCCCGCCCCCCACCCCGCCCCCTCCCCGCCTC CGGCCGCTGTGGCGCAGACCTTGACTCACGAGCTGCAAGAGTCGTAAAGGGTCCCCAAGC CTCAGTGCCGGGTAAGCAAGGCAGCGGGTCGCAGCCCCCTCCTGGGCGGGCCTTCGCGTC CCGCCCCCGGCCACCACTCGACACCCTCTGCCTGACGTCAAGGGGTTGGGGGCGGAGAGC GGCGGTGGCGGCGGCTGCAGCGGAGAAAGAACCGGCGCCCGGCGCGGTGGAGCGCCGAAT CCGAGCTCAGGGGCGCCGAGAGCCGTGCTGAGACCGAGGGGCGGTGGCACGGGACAGCCT TAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGACGGTGGCC GGAGTCAAACGCGAGGGCAGCGCCCAGGGATTGGAGCTGCACGAAAGAGGTGAGTGAGGC CGGAGCGGTGGGGCCCCGGGGCCGCTGCTTTGTCCCCTTGCTTGGGTAGGGGCTAGCGCG CGCGCTAGGGGACAGCGTCTAGGGGTGCAGGGCGGGGCGACAGCAAAGACAGCTGTCCGA TCCGGGTCCCTCTTGAGTCCGCCGCGGGCTGCCCAGTGGCGATCGGCATCAAGGCAAGCA GTGCCTGCAGCTCCACTGGCCGGAGCAGCGGGAGCCTGGGGGTACGGACAGCGCTAGGGG CAGTGGGGGACCCTTGGGCTGTCCAGCGCGCGGTCCGAATCTTTGCCAGGCTCGCGAACT GCTCGGGTTCCCCCCACCTCGACGGAAAGTTAGGGGCGGGCTTGGACCGTGGCCGATGTT GTGGGATCGGATTTCCCTAGCGCGGCCCCCCGCCCTCCCGTTCTGCTCCGGAGGCGGGCT GGCACTGAGAACCAGCCCCCTAGCCAAAGCTCCGCCGCCCGGTCCCTCTC
1	EXON 1	36,557,360	36,557,534	-	-	175	TGGAGCGCCGCAATCCACGACCGGGTGTGCAAGTGTGGGGTGCAAATCCTGGTCCTGCAC CCCTCCATCCCCTTGGCTGTCCGTGTCCCTTGCTTCGGGAAGAGCTTGGGGGTTGGGTCA CCGCTACGCCTGCAGATTCTCGGAGCGCACCACCGGGTTTTGACCCCAGCCTAGG
	INTRON 1 - 2	36,556,930	36,557,359			430	GTAATTGGCAGAGAGGAAACTGAGG..........TTTGTGGGCATCCCCTGTTGTCCAG
2	EXON 2	36,556,803	36,556,929	-	-	127	GAGAACCCCGCTTCGGCCTCCCCAACCCATTTCACTTCCCTCCACGATCCCGCTCCCGCG GAGGCGAGGAGATTCCCAGACAGAAGCCTGGAACTGACTCGTGGCCCGGTCGCCTCTCTG CGGGAGG
	INTRON 2 - 3	36,556,078	36,556,802			725	GTCAGTGTCTTGTAGAAGGCTGTTG..........TGACCAGTTTCTTTTCCTTCAGCAG
3	EXON 3	36,555,932	36,556,077	-	1	146	GGCTGCTGGACTGAAGTTTAGACCCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTG GCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATCGGGGCTGAGATGTGGTGGAACCTTGT GCCCCGGAAGACAGTATCTTCTGGGG
	INTRON 3 - 4	36,554,404	36,555,931			1,528	GTGAGTGCCTGAAGCATGGGAGGCA..........CACCTTGTTCTAATATCTGTTTCTG
4	EXON 4	36,554,400	36,554,403	1	-	4	CAGA
	3' upstream sequence						GCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACACTGAC CCTGACAGAACATTCTGGCCTTTTATATGTGGGGGCCCGAGAGGCGCTGTTTGCCTTCAG TGTAGAGGCTCTGGAGCTGCAAGGAGCGGTGAGAGGTGGGGCAGTGGGAGGCACTCAGAG GGGAGAGGGAAAGGACTCAGGGTGTAGCCTGTGCAGGCTGTCCCTCAGCCCAGCTCTCTT GGGGTGTCAAGATTAGCAATTGCTTTCTGCTCCTGGTTTCTGCTAGTTGGGGTGGTTTGG GGCTTCTGTCAGAATGGGGACCAGGCGTCATCGATGGTGTAGCTTGAGGGGTGTTTGCAG CACACTTAGCGCAGACCTGTGACATTGCTGATGTGTCTGTCCAATCCTCAGATCTCTTGG GAGGCTCCAGCTGAGAAGAAAATTGAATGTACCCAGAAAGGGAAGAGCAACCAGGTGGGT GCTTAGAGAGCTTCCCCTGCCAGCCTCCTTCTTTAATCTGCACCCCGGTGATCTCCTATC TCTGACTCTCAGTTCTCACTAACCTGTATACCTTTCTCTCCAAAGACCGAATGCTTCAAC TTCATCCGCTTCCTTCAGCCATACAATGCCTCCCATCTGTACGTCTGCGGCACCTATGCC TTCCAGCCCAAGTGTACCTACATCGTGAGTGGTTCCCCCTCTCTTTGGGTGTGCCCCTTA CCCACCTGTTCCTAACCTATGACCTCCTTCCTTGACCTCTCGGGGCCATGATATTTTCAG ACTGTATAGAGCCCCATAGTAACACCCGTCTTCGATGTCTTCCTGCCCCTAGAACATGCT CACGTTCACCTTGGACCGTGCAGAATTTGAGGATGGGAAGGGTAAATGCCCATATGACCC AGCTAAGGGTCACACCGGACTCCTTGTGGGTGAGTGGCTGCTGCCAGCACAGAGGGGAGA ATCTGGGCCTCTGTCAGTCACGCTCTGAGTACTTACTTGT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000193382

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 37 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information