MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Il1rl2 (ENSMUSG00000070942)

Cross Reference

EMBL	AC167168
GO	GO:0004896, GO:0004908, GO:0005575, ...show all
goslim_goa	GO:0003674, GO:0004871, GO:0005575, ...show all
MGI_trans_name	Il1rl2-003
OTTP	OTTMUSP00000068979
OTTT	OTTMUST00000128138
UniParc	UPI00054993D1
Uniprot/SPTREMBL	A0A0A6YWD7
Vega_transcript	Il1rl2-003, OTTMUST00000128138
Vega_translation	179123, OTTMUSP00000068979

Definition

protein_id:ENSMUSP00000141507
translation:

MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYK
TPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWC
DSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYK

Chromosome

Length
Position(start - end)

2,675
40,326,495 - 40,329,171

Orient to Chromosome

plus

Link

Location : (1:40326495-40329171)
/

Detail Map

name	Il1rl2 (ENSMUSG00000070942)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Il1rl2 note : interleukin 1 receptor-like 2 [Source:MGI Symbol;Acc:MGI:1913107]

name	Il1rl2 (ENSMUSG00000070942)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000095020

name	Il1rl2 (ENSMUSG00000070942)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194296

name	Il1rl2 (ENSMUSG00000070942)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000193388

name	Il1rl2 (ENSMUSG00000070942) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14910.1 Uniprot/SWISSPROT:Q9ERS7 RefSeq_peptide:NP_573456 RefSeq_mRNA:NM_133193.3 RefSeq_peptide_predicted:XP_006495674.1 Vega_transcript:Il1rl2-001 Vega_transcript:OTTMUST00000128136 Uniprot/SPTREMBL:Q149G7 UCSC:uc007atx.1 EMBL:AF284433 EMBL:BC117797 EMBL:CH466536 GO:GO:0004896 GO:GO:0004909 GO:GO:0005575 GO:GO:0006954 GO:GO:0016021 GO:GO:0019221 GO:GO:0032755 GO:GO:0045087 GO:GO:0045582 GO:GO:0050727 GO:GO:0070498 MGI_trans_name:Il1rl2-001 Vega_translation:179121 Vega_translation:OTTMUSP00000068977 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 protein_id:AAG21367.1 protein_id:AAI17798.1 protein_id:EDL14574.1 OTTP:OTTMUSP00000068977 OTTT:OTTMUST00000128136 UniParc:UPI000002770C
definition	note : transcript_id=ENSMUST00000095020 protein_id : ENSMUSP00000092630 translation : MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYKTPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYKGCEEIKAGKKYSPSGAKLLVNNVAVEDGGSYACSARLTHLGRHFTIRNYIAVNTKEVEYGRRIPNITYPKNNSIEVPLGSTLIVNCNITDTKENTNLRCWRVNNTLVDDYYKDSKRIQEGIETNVSLRDQIRYTVNITFLKVKMEDYGRPFTCHAGVSAAYIILIYPVPDFRAYLLGGLMAFLLLVVSVLFIYNSFKIDIMLWYRSAFHTAQAPDDEKLYDAYVLYPKYPRGSQGHDVDTLVLKILPEVLEKQCGYKLFIFGRDEFPGQAVASVIDENIKLCRRLMVFVAPESSSFGFLKNLSEEQIAVYNALIQHGMKVILIELEKVKDYSTMPESIQYIRQKHGAIQWDGDFTEQSQCAKTKFWKKVRYHMPPRRYPASSPVQLLGHIPCNCKAGKCNAATGLITP

name	Il1rl2 (ENSMUSG00000070942) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14910.1 Uniprot/SWISSPROT:Q9ERS7 RefSeq_mRNA_predicted:XM_006495608.2 RefSeq_mRNA_predicted:XM_006495609.2 RefSeq_mRNA_predicted:XM_006495610.2 RefSeq_peptide_predicted:XP_006495671.1 RefSeq_peptide_predicted:XP_006495672.1 RefSeq_peptide_predicted:XP_006495673.1 RefSeq_peptide_predicted:XP_006495674.1 Vega_transcript:Il1rl2-002 Vega_transcript:OTTMUST00000128137 Uniprot/SPTREMBL:Q149G7 UCSC:uc007aty.1 EMBL:AF284433 EMBL:BC117797 EMBL:CH466536 GO:GO:0004896 GO:GO:0004909 GO:GO:0005575 GO:GO:0006954 GO:GO:0016021 GO:GO:0019221 GO:GO:0032755 GO:GO:0045087 GO:GO:0045582 GO:GO:0050727 GO:GO:0070498 MGI_trans_name:Il1rl2-002 Vega_translation:179122 Vega_translation:OTTMUSP00000068978 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 protein_id:AAG21367.1 protein_id:AAI17798.1 protein_id:EDL14574.1 OTTP:OTTMUSP00000068978 OTTT:OTTMUST00000128137 UniParc:UPI000002770C
definition	note : transcript_id=ENSMUST00000194296 protein_id : ENSMUSP00000142248 translation : MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYKTPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYKGCEEIKAGKKYSPSGAKLLVNNVAVEDGGSYACSARLTHLGRHFTIRNYIAVNTKEVEYGRRIPNITYPKNNSIEVPLGSTLIVNCNITDTKENTNLRCWRVNNTLVDDYYKDSKRIQEGIETNVSLRDQIRYTVNITFLKVKMEDYGRPFTCHAGVSAAYIILIYPVPDFRAYLLGGLMAFLLLVVSVLFIYNSFKIDIMLWYRSAFHTAQAPDDEKLYDAYVLYPKYPRGSQGHDVDTLVLKILPEVLEKQCGYKLFIFGRDEFPGQAVASVIDENIKLCRRLMVFVAPESSSFGFLKNLSEEQIAVYNALIQHGMKVILIELEKVKDYSTMPESIQYIRQKHGAIQWDGDFTEQSQCAKTKFWKKVRYHMPPRRYPASSPVQLLGHIPCNCKAGKCNAATGLITP

name	Il1rl2 (ENSMUSG00000070942) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Il1rl2-003 Vega_transcript:OTTMUST00000128138 Uniprot/SPTREMBL:A0A0A6YWD7 EMBL:AC167168 GO:GO:0004896 GO:GO:0004908 GO:GO:0005575 GO:GO:0019221 GO:GO:0032755 GO:GO:0045582 GO:GO:0050727 MGI_trans_name:Il1rl2-003 Vega_translation:179123 Vega_translation:OTTMUSP00000068979 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0007165 goslim_goa:GO:0008150 OTTP:OTTMUSP00000068979 OTTT:OTTMUST00000128138 UniParc:UPI00054993D1
definition	note : transcript_id=ENSMUST00000193388 protein_id : ENSMUSP00000141507 translation : MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYKTPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYK

name
type	misc_feature
link
xref
definition	note : contig AC167168.5 1..133528(-1)

name	Il1rl2 (ENSMUSG00000070942)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000128135 Vega_transcript:OTTMUST00000128135 MGI_trans_name:Il1rl2-004 OTTT:OTTMUST00000128135
definition	note : retained_intron note : transcript_id=ENSMUST00000192551

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Il1rl2 (ENSMUSG00000070942)
Transcript ID	ENSMUST00000193388

Reports
substitution
cSNPs	3
Insertion	6
Deletion	8
SNPs	-1kb 40320611(c.-5884G>C), 40320767(c.-5728C>T), 40320783(c.-5712A>T), 40321009(c.-5486T>C), 40321767(c.-4728C>G), 40321784(c.-4711T>C), 40321857(c.-4638T>C), 40322012(c.-4483G>A), 40322056(c.-4439T>C), 40322217(c.-4278G>A), 40322356(c.-4139C>G), 40322403(c.-4092A>C), 40322426(c.-4069G>A), 40322439(c.-4056G>T), 40322573(c.-3922T>C), 40322898(c.-3597A>G), 40323132(c.-3363G>A), 40323293(c.-3202T>C), 40323352(c.-3143A>G), 40323390(c.-3105A>C), 40323392(c.-3103C>T), 40323443(c.-3052C>T), 40323471(c.-3024C>T), 40323485(c.-3010C>T), 40323639(c.-2856C>G), 40323643(c.-2852G>C), 40323667(c.-2828A>G), 40323676(c.-2819C>A), 40323768(c.-2727C>T), 40323797(c.-2698G>T), 40323950(c.-2545C>T), 40323954(c.-2541T>A), 40324090(c.-2405C>T), 40324091(c.-2404A>G), 40324092(c.-2403G>A), 40324154(c.-2341G>A), 40324241(c.-2254T>A), 40324295(c.-2200G>A), 40324458(c.-2037T>A), 40324496(c.-1999T>A), 40324571(c.-1924A>C), 40324642(c.-1853C>T), 40324644(c.-1851C>T), 40324806(c.-1689T>C), 40324936(c.-1559T>A), 40324999(c.-1496C>T), 40325023(c.-1472G>A), 40325148(c.-1347G>T), 40325218(c.-1277A>G), 40325242(c.-1253A>C), 40325284(c.-1211A>G), 40325476(c.-1019A>T), 40325528(c.-967A>G), 40325558(c.-937G>A), 40325582(c.-913G>C), 5'UTR CDS 40326534(c.40C>G), 40327446(c.139C>T), 40327448(c.141G>C), 3'UTR 40325612(c.-192A>G), INTRON 40325811(c.-7+14G>A), 40325843(c.-7+46G>A), 40325856(c.-7+59A>G), 40325864(c.-7+67T>C), 40326051(c.-7+254T>G), 40326084(c.-7+287C>T), 40326102(c.-7+305A>G), 40326110(c.-7+313A>T), 40326125(c.-7+328C>T), 40326181(c.-6-308G>T), 40326228(c.-6-261C>T), 40326272(c.-6-217C>A), 40326277(c.-6-212A>C), 40326408(c.-6-81A>G), 40326426(c.-6-63C>G), 40326451(c.-6-38C>T), 40326587(c.64+29T>C), 40326665(c.64+107G>A), 40326883(c.64+325C>T), 40326962(c.64+404C>T), 40327104(c.65-268A>G), 40327115(c.65-257A>G), 40327218(c.65-154G>A), 40327790(c.299+184A>G), 40327825(c.299+219A>G), 40327848(c.299+242C>T), 40327879(c.299+273C>T), 40328381(c.300-590G>C), 40328394(c.300-577C>T), 40328422(c.300-549T>C), 40328432(c.300-539C>G), 40328445(c.300-526T>C), 40328522(c.300-449T>C), 40328533(c.300-438A>T), 40328783(c.300-188G>A), +1kb 40329399(c.228G>A), 40329602(c.431A>T), 40329930(c.759T>G), 40329992(c.821A>C), 40330048(c.877T>C), 40330063(c.892C>T), 40330064(c.893T>C), 40330157(c.986T>G), 40330305(c.1134A>C), 40330394(c.1223C>G), 40330402(c.1231C>T), 40330429(c.1258T>G), 40330491(c.1320C>A), 40330542(c.1371C>T), 40330658(c.1487C>G), 40331354(c.2183T>G), 40331655(c.2484A>G), 40332056(c.2885T>G), 40332064(c.2893G>T), 40332171(c.3000C>T), 40332226(c.3055T>A), 40332233(c.3062A>T), 40332234(c.3063A>T), 40332346(c.3175A>C), 40333272(c.4101A>G), 40333513(c.4342T>C), 40333543(c.4372T>C), 40333546(c.4375G>T), 40333550(c.4379G>A), 40333575(c.4404A>C), 40333598(c.4427G>T), 40333896(c.4725T>C), 40333899(c.*4728T>C),
Insertions	-1kb 40322380 (c.-4115_-4114insG), 40322928 (c.-3567_-3566insT), 40323831 (c.-2664_-2663insATCT), 40324721 (c.-1774_-1773insG), 5'UTR CDS 3'UTR INTRON +1kb 40331852 (c.2681_2682insTTT), 40332077 (c.2906_2907insT),
Deletions	-1kb 40323343 (c.-3151delC), 40324260 (c.-2234delT), 40325482 (c.-1012_-1009delGACT), 5'UTR CDS 3'UTR INTRON 40328069 (c.299+465delA), 40328266 (c.299+680_300-682delGTCT), +1kb 40329416 (c.246_248delTGT), 40329422 (c.252_254delTGT), 40331586 (c.*2416delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	2
synonymous substitutions	40327448 (p.Pro47Pro),
non-synonymous substitutions	40326534 (p.Leu14Val), 40327446 (p.Pro47Ser),
B6 transcript (ENSMUST00000193388)	MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYK TPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWC DSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYK
MSMv4 transcript	MGVTSLLFCGVFFVLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYSPETNGAVNLTWYK TPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWC DSSMEGSPVNSPDVYQQILPIGKSGSLNCHLYFPESCALDSIKWYK
homology	98.80 (166 / 166)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Il1rl2 (ENSMUSG00000070942)
Transcript ID	ENSMUST00000193388

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGAGATGATGGCTTCTGATGTTTGTTGCTTATGTGACACAGCTTGTTTGG AATTATGTGGCCCTTGACAACTGCGTGGCACACACTTCAAGATACAAAAGTGAGAAGAAG AGGGGGGTCACCAGAGGAGACTGAAGTCAGTAAGTTTCTACCAAAGCTGGGTTTCTTCTG GCCACTCCAAACAAAGCTGAAATTGCCCTTCAGACCTCTGTGAGTACAGTCTCAGTTCCT TCCGTAGTTCTCTGGGAGGTTCTGCGTGCACACACGTGATAGTTTTGTGTTTTTATTTTT AAAACTTCAATCAGTTTTGTCTTAATTTTATATATAACTGGGGTTTGGTGCGCACTAATT GAACCCAGCTTCTTTTCACCGGCTTCATCCACCCACCCTTGTAATCTCTCTTCTACATCT TAACTTCCTGTTTGTTTAATTTCCGTATAGGTAGGACGTTTCTTCTGTTTCTCATTCCGC TTAACGTCGTGGTTTTTGTTTTTGTTTTCCCTGAAAACTCACTATCCCCATATCTGTTCT GTATCCATAACTAATGATTGATTCCTCATGCATCAGCAGACTTACTCAACACAGAGATCA TCCCAGAATTGTAAGGCGGAGTGCTTCTGCCAAGGGACAGTCCTCGGACAGACACGTGTA CATCTTAACTTTGTGAACCTGGGGCAGCTAGTCAGACTGACGCTGTGGTTGTTTTCAAAG TCTTACAGTTTCTAATCCACAAAGACTCCGAGGGATGCCCACTAAGAAGCTGTTGGTCTG ACAGCGTTTGCCGCCACTGCTCTTCTCAGTGCCTAGTGGGGTCTCCAGTGTCTCTGGCGC AGGAAGACAGGTCCGAGCAAGCATTACTTTATGGCAAGTTTAGACTGACTGTATCGGTGC TCAACCTGTCGGGAGTCTGCTTTACCTGAGATCTGGCACGAGGACGGGGCTGGGGTGAGG TTAATGCCTTTTCTCAGAAGCCCTTCCACCTCTGGAATAGTCCATTTTAG
1	EXON 1	40,325,611	40,325,797	-	-	187	GGCAGTGCTGGGTGTGTAAGAACCGCTCAGATAGTGTTTGGAAAGGATATAATAATTTTT AGCGATGATCTGGAGCATATTTAAGCCGACATTCCTGATAGATGAACGTGCTGGCCTGGG ATCAGGAAAAAAAGACTGAACGATTTTCGAAGGACGGATTATTTCTGTCCTGCTCCACTT GGGGAAG
	INTRON 1 - 2	40,325,798	40,326,488			691	GTGAGTCTGTTCCACCCGCGGCGGA..........CATTGTCCTCTCTTTTCCTTTGTAG
2	EXON 2	40,326,489	40,326,558	-	1	70	CCTGAGATGGGGGTTACATCTTTGCTCTTCTGTGGGGTGTTTTTCGTGCTTCTGCTTTTC GTGGCAGCAG
	INTRON 2 - 3	40,326,559	40,327,371			813	GTAAGTTCTGCGGGTCTGTGAGTCC..........TTATTGTTTTCCTTTCCTTCCCCAG
3	EXON 3	40,327,372	40,327,606	1	2	235	ATACGTGTGAGGACATTTTTATGCACAATGTGATAATTTCAGAGGGCCAGCCTTTTCCTT TCAACTGCACATACTCCCCAGAAACAAACGGGGCAGTAAATCTGACATGGTACAAAACAC CTAGCAAAAGCCCAGTATCTAACAACAGACACCTTAGAGTTCACCAGGACCAGACCTGGA TCTTGTTTCTTCCATTGACACTGGAGGACTCCGGTATCTATCAGTGTGTTATAAG
	INTRON 3 - 4	40,327,607	40,328,970			1,364	GTAAGTCCTTCATTTAAAGTGGAAC..........GTTTTTGTTTTGTTTTGTTTTACAG
4	EXON 4	40,328,971	40,329,171	2	-	201	GAATGCCCACAACTGCTACCAAATAGCTGTGAACCTAACCGTTTTAAAAAACCACTGGTG TGACTCTTCCATGGAGGGGAGTCCCGTAAATTCACCAGATGTGTACCAGCAAATATTACC CATAGGAAAATCGGGCAGTCTGAATTGTCATCTCTACTTCCCAGAAAGTTGTGCTTTGGA TTCAATAAAATGGTATAAGGT
	3' upstream sequence						AAAACCAAACCCAAACCCAAACCAAACAAAACCAAACCAACAACAATAACAAAACAACAA TGAAATCCTCTATTGATAATGTTTTCTCCTCTTATATAAAACCCACTTTCCCCACCAAGG GGAAAGCTTTCTGGATTCTCAGAAAGCCCCCTTCAGGGCAGGTTTGGTATATAGTTGGTG CACCTGAGACAGGTGGTAGTAATTTTGATAATTACTTTAAACTTATGATTGTTATTGTTT TATAATGTTGTTGTATCTTCTCTATACCCCAAATTATCCATTTTTCAAGTTCCTGTTGTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CCTCCCTCCCTCCCTCTCTCTTTCTCTCTCTTTCTTTTTCATTCACCTTGGTTTGTTAGA ATGGCTCTGATATCTGGTACTTTGAAAATTACAAATTACACAAATTCTTGCCTAAGAAAG ACTCCTCAGGGCTATCTGTGTTCTGTTACTCACCAAACCTTGTCCCCAGCCATGGCTGCT GCTATCAACTACTGCCACCCTCCTCCCGCCACTCCCCACCTCAGTATTTGAAAACTCAGT TGTATCTTAGCCTCTTCTCTTTGAAATGTGAACAGTTTCCCATGCTCCTCTTTCTTCATC CTGTGTTTGCTTTAACCTGGCCTTCTCTCCTCAAGGCTCAGCTAGACACTGCCTGTCAGC TACCTTGAGTTTCCTTTGTGGCAGCCTTCCTAACACTGGGACCCTTCAATACAGTTCCTC ACATTGTGGTGACACCCCAACCATACAATTATTTTCATCGCTACTTCATAACTGTAGTTT TGTTACTGTTAGAATTGTAAATAAATATCTGATATGCTTCTCCTGTGGGGGTCGTGACCC CCAGGTTGAGAACCACTGCTGTTTCATGGGTTTGGATTCACCTCCCCCACTTCGTCTGTG GCACGGGATTATTCAAACGTCTTACGTTTTCCTTTGCTGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Il1rl2 (ENSMUSG00000070942)
Transcript ID	ENSMUST00000193388

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 166 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information