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Target CDS Information

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Cross Reference
EMBL AC123072, AC124386, AC127433
GO GO:0003779, GO:0005515, GO:0007010, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dst-004
OTTP OTTMUSP00000065431
OTTT OTTMUST00000116984
UniParc UPI00053BD8F7
Uniprot/SPTREMBL A0A0A6YWC6
Vega_transcript Dst-004, OTTMUST00000116984
Vega_translation 178899, OTTMUSP00000065431
Definition protein_id:ENSMUSP00000141491
translation:
MIAAAFLVLLRPYSIQCALFLLLLLLGTVATIVFFCCWHRKLQKGRHPMKSVFSGRSRSR
DAALRSHHFRSEGFRASPRHIRRRVAAAAAARLEEVKPVVEVHHQSEQESSGRKRRIKKN
SRVQPEFYHSVQGASTRRPSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWN
LPKHERSKRKIQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYED
LRDGHNLISLLEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGN
PKLTLGLIWTIILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRD
GKLFNAIIHKYRPDLIDMNTVAVQSNLANLEHAFYVAEKIGVIRLLDPEDVDVSSPDEKS
VITYVSSLYDAFPKVPEGGEGIGANDVEVKWIEYQNMVNYLIQWIRHHVVTMSERTFPNN
PLELKALYNQYLQFKEKEIPPKEMEKSKIKRLYKLLEIWIEFGRIKLLQGYHPNDIEKEW
GKLIIAMLEREKALRPEVERLDMLQQIATRVQRDSVSCEDKLILARNALQSDSKRLESGV
QFQNEAEIAGYILECENLLRQHVIDVQILIDGKYYQADQLVQRVAKLRDEIMALRNECSS
VYSKGRMLTTEQTKLMISGITQSLNSGFA

Chromosome 1
Length
Position(start - end)
254,874
33,908,272 - 34,163,147
Orient to Chromosome plus
Link Location : (1:33908272-34163147)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000194011
Reports
substitution
cSNPs3
Insertion181
Deletion246
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 34116141 (p.Arg267Arg), 34156837 (p.Ile536Ile), 34156903 (p.Val558Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000194011)
MIAAAFLVLLRPYSIQCALFLLLLLLGTVATIVFFCCWHRKLQKGRHPMKSVFSGRSRSR
DAALRSHHFRSEGFRASPRHIRRRVAAAAAARLEEVKPVVEVHHQSEQESSGRKRRIKKN
SRVQPEFYHSVQGASTRRPSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWN
LPKHERSKRKIQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYED
LRDGHNLISLLEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGN
PKLTLGLIWTIILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRD
GKLFNAIIHKYRPDLIDMNTVAVQSNLANLEHAFYVAEKIGVIRLLDPEDVDVSSPDEKS
VITYVSSLYDAFPKVPEGGEGIGANDVEVKWIEYQNMVNYLIQWIRHHVVTMSERTFPNN
PLELKALYNQYLQFKEKEIPPKEMEKSKIKRLYKLLEIWIEFGRIKLLQGYHPNDIEKEW
GKLIIAMLEREKALRPEVERLDMLQQIATRVQRDSVSCEDKLILARNALQSDSKRLESGV
QFQNEAEIAGYILECENLLRQHVIDVQILIDGKYYQADQLVQRVAKLRDEIMALRNECSS
VYSKGRMLTTEQTKLMISGITQSLNSGFA
MSMv4 transcript
MIAAAFLVLLRPYSIQCALFLLLLLLGTVATIVFFCCWHRKLQKGRHPMKSVFSGRSRSR
DAALRSHHFRSEGFRASPRHIRRRVAAAAAARLEEVKPVVEVHHQSEQESSGRKRRIKKN
SRVQPEFYHSVQGASTRRPSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWN
LPKHERSKRKIQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYED
LRDGHNLISLLEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGN
PKLTLGLIWTIILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRD
GKLFNAIIHKYRPDLIDMNTVAVQSNLANLEHAFYVAEKIGVIRLLDPEDVDVSSPDEKS
VITYVSSLYDAFPKVPEGGEGIGANDVEVKWIEYQNMVNYLIQWIRHHVVTMSERTFPNN
PLELKALYNQYLQFKEKEIPPKEMEKSKIKRLYKLLEIWIEFGRIKLLQGYHPNDIEKEW
GKLIIAMLEREKALRPEVERLDMLQQIATRVQRDSVSCEDKLILARNALQSDSKRLESGV
QFQNEAEIAGYILECENLLRQHVIDVQILIDGKYYQADQLVQRVAKLRDEIMALRNECSS
VYSKGRMLTTEQTKLMISGITQSLNSGFA
homology100.00 (689 / 689)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000194011
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAGTGTGACCGATTACCGTTGTCTGACAGTGCCTAAAAATTTCTCCTGCA
GTATCTACAGGCCAATCAATCACCAACTTCCTTCATCCTTCATCATGTCAGATCCTTACA
TCTAAAATCACCTCTCCCTACAAAGCCAATAAATGAATCAGGGTTCTTTGACCGTGGCAG
AGCTCACGTCTGGGCTGAGAATCAGCACCAAGTTTGGGGGTGGTAGGGTGCAAGCCTGCA
GACCGCGGCGTGCCGCCTTTCCTAAGATTGGACCAGCTTGGAGATGGCCCTTCCAGGTGC
TCGCGCCTCCATGCGCAGGGACTACCCCCGCCCCCAAACCAAATAGCTCACCCTGCTGCA
TCCTCCGAGCCCCAGCCTCCGGGCGGGCTCAGGGAGGCGGGAGCCCGGGTTCCCCCCGGC
TCCTTGGCGCCCCCTGACGTCGGCCTCCAGCAGAAGGTCCGCGGAGGCTTACACAGGCGA
AACCCGGGGGTCCCCGCGCACCGCCGCCCGGCGCGTGGCCTGGCGGGCCGCGCGCGCACC
GAACCGACCTGCTGGAGGGCGCGCGCCGCTCGGTCCCGGCCCCAGCCATGCGCGCGCGTC
CGCACCCGCGCCGCCGCCGCCACCGCAGCCCGTGACGTCACCCACCGAGCCCCCCGCCGG
CTCGCCGCGCCCCGTCCCGCCCCACGTGCGCCGGCTTCAGGACGCCGAGGCCCCGGGCGG
CCACCCGATGATGCTCCCAGCCAGCTGCGTCCCGGGCGGGGCTGAGCCCGAGAGCTGCGC
GCGGGCTGGGGCGCCTGCGGAGGGAGGGGCGCGGCTCTCGCCGCTGCGCCGCGTGCTGAG
TCATGGCGAGAGCTGCCCGCTGCTCTCCATCAGTCGTTCCGGGGCCGGCGCGGGGTGTGC
AGCCATTGGGCCGCGCGCGGGGCCGCGAGCGCCGGGCTTGACGCGCTGAGCCGCGCTCGC
CCCTGTCCGCCGCGCCCGCCCCGCGTCCCGCGCCCCGCGCCCCGCGCGCT
1 EXON 1 33,908,225 33,908,452 - 1 228
CTGCAGCCTTAGCCCCGCGCCGCACGGCCCCCCGCCTCGCCCGCACCATGATCGCCGCCG
CTTTCCTCGTTTTGCTGAGACCCTACAGCATCCAATGTGCTCTCTTCCTCTTGTTGCTCC
TGCTGGGCACCGTCGCCACCATCGTCTTCTTCTGCTGCTGGCACCGCAAGCTCCAGAAAG
GGAGACATCCGATGAAATCGGTCTTTTCGGGTCGTTCCAGAAGCAGAG
INTRON 1 - 2 33,908,453 33,908,998 546
GTAAGACACGCCGCCGCTGGGTTCT..........CTCGTTTTCCCTCTTTTCTCCCCAG
2 EXON 2 33,908,999 33,909,033 1 0 35
ATGCTGCTCTGAGATCTCATCACTTTCGCTCTGAG
INTRON 2 - 3 33,909,034 33,968,702 59,669
GTAATTTATTTAGCGCACACTCTCA..........TTTCTGTGTGTGTTTCCTGCCACAG
3 EXON 3 33,968,703 33,968,903 0 0 201
GGGTTCCGAGCAAGCCCCCGACACATCAGGAGGCGAGTTGCAGCGGCCGCAGCTGCCCGG
CTTGAAGAAGTGAAGCCTGTGGTGGAAGTCCATCATCAGAGTGAACAAGAGTCATCGGGG
AGGAAGCGAAGGATCAAGAAAAACAGCCGGGTGCAGCCAGAATTCTATCACTCTGTTCAA
GGTGCTTCCACCAGAAGGCCT
INTRON 3 - 4 33,968,904 34,006,190 37,287
GTAAGTAGAAAGCTGTCTTTTGTAC..........GCTTCTCCTGTGTCATCCTCCTCAG
4 EXON 4 34,006,191 34,006,398 0 1 208
AGCTCCGGGAACGCGTCCTACCGCTGTTCTATGTCCTCCTCTGCGGATTTTTCTGACGAG
GATGATTTCAGCCAGAAATCTGGCTCAGCATCTCCGGCTCCTGGAGACACCTTACCCTGG
AATTTGCCCAAGCATGAGAGATCCAAAAGAAAGATTCAAGGGGGCTCGGTGCTGGACCCA
GCCGAGAGGGCTGTGCTTCGGATAGCAG
INTRON 4 - 5 34,006,399 34,086,241 79,843
GTGAGTGGGGGAGGGGATGGAGTGG..........TTATGTTTGTTTGTTTGTTTTCCAG
5 EXON 5 34,086,242 34,086,303 1 0 62
ATGAGCGGGACAAAGTTCAAAAGAAAACATTTACAAAATGGATAAATCAGCATCTCATGA
AG
INTRON 5 - 6 34,086,304 34,113,932 27,629
GTGAGTCGCTCGCTTGCTCACTCGC..........AAAGATGGCCGCTTTGTCGCCGTAG
6 EXON 6 34,113,933 34,114,022 0 0 90
GTTCGGAAGCACGTGAACGATCTCTACGAGGATCTGAGGGACGGGCACAATTTGATCTCC
CTCCTGGAGGTTCTGTCTGGAGACACCTTG
INTRON 6 - 7 34,114,023 34,116,117 2,095
GTAAGTGTGCGCTTTCCTGATTTCT..........CACACCTTCCATTTTCTGTCCTTAG
7 EXON 7 34,116,118 34,116,195 0 0 78
CCCCGGGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAACGTACAGATTGCACTCGAC
TATTTGAAAAGACGCCAG
INTRON 7 - 8 34,116,196 34,117,431 1,236
GTATGAGATTTTTCAGACTCTAGCG..........GTTTCTCTCTCTCACCTACAAACAG
8 EXON 8 34,117,432 34,117,524 0 0 93
GTGAAGTTGGTGAACATCAGAAATGATGACATAACAGATGGAAATCCTAAGCTGACTTTG
GGGTTAATATGGACAATAATTCTGCACTTTCAG
INTRON 8 - 9 34,117,525 34,135,089 17,565
GTGAGTCCACTTTGTCTTTGTTGCC..........GGTCTGATGCTTCCGTTATATTTAG
9 EXON 9 34,135,090 34,135,256 0 2 167
ATATCTGACATCCATGTCACTGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGCTGCTC
CTGTGGACACAGCAGGCGACAGAAGGCTATGCTGGGGTGCGGTGTGAAAACTTCACTACC
TGCTGGAGAGATGGGAAACTATTCAATGCCATCATTCATAAATACAG
INTRON 9 - 10 34,135,257 34,152,201 16,945
GTACAGAATGTGTCCGGCCTTGTCG..........CTTAACACGGTGCACTTTTTCCTAG
10 EXON 10 34,152,202 34,152,314 2 1 113
GCCGGACCTGATAGACATGAATACTGTTGCTGTTCAAAGCAACCTTGCAAATTTAGAGCA
TGCTTTTTATGTAGCTGAAAAAATCGGTGTTATCAGACTTCTGGACCCTGAAG
INTRON 10 - 11 34,152,315 34,152,412 98
GTGAGTTGTCTTCTTGACTCTTACC..........AACTCATCTCTGTTGCTGCTTGTAG
11 EXON 11 34,152,413 34,152,519 1 0 107
ATGTCGACGTCTCTTCCCCGGACGAGAAGTCGGTGATAACCTATGTGTCCTCCCTTTATG
ATGCCTTTCCCAAAGTCCCCGAAGGTGGCGAAGGCATTGGTGCAAAC
INTRON 11 - 12 34,152,520 34,154,512 1,993
GTGAGTGTTGCCTTTTCTGCGCTTG..........GCTTTCCTGCTGTTTTGTCATCTAG
12 EXON 12 34,154,513 34,154,632 0 0 120
GATGTTGAAGTCAAATGGATTGAATACCAGAATATGGTGAACTACCTCATCCAGTGGATT
AGACACCACGTGGTCACTATGTCCGAGAGAACATTTCCTAACAACCCTCTAGAACTAAAG
INTRON 12 - 13 34,154,633 34,156,598 1,966
GTTGGTATATCACCGACATCCCGAG..........TAATTCATTTCCCTTTCCATTGTAG
13 EXON 13 34,156,599 34,156,694 0 0 96
GCACTTTATAATCAGTATTTACAGTTCAAAGAGAAAGAAATCCCACCAAAGGAGATGGAG
AAATCAAAAATTAAACGACTGTATAAATTATTAGAG
INTRON 13 - 14 34,156,695 34,156,780 86
GTGAGCCAAGTACTGTTCGGTACTT..........ACATTAGTTCTCTTGTTCCCTTAAG
14 EXON 14 34,156,781 34,156,908 0 2 128
ATCTGGATCGAGTTTGGGCGCATCAAACTCCTTCAAGGTTATCATCCGAACGACATTGAG
AAGGAGTGGGGCAAACTCATCATCGCCATGCTTGAGCGGGAGAAGGCACTACGTCCCGAG
GTGGAGAG
INTRON 14 - 15 34,156,909 34,160,619 3,711
GTAGGGATGCTGTCCTAGACCGGAG..........TCTCTTTTCCCTTTGACCCTTTTAG
15 EXON 15 34,160,620 34,160,713 2 0 94
GTTGGATATGCTGCAGCAGATTGCCACCCGAGTTCAGAGGGATAGTGTCAGCTGCGAAGA
CAAACTCATCCTCGCCCGAAATGCTCTCCAGTCT
INTRON 15 - 16 34,160,714 34,161,003 290
GTAAGTCGACTTCAAGGGCTAGGGC..........TAATGCCGAGTTCTTTTAAATATAG
16 EXON 16 34,161,004 34,161,158 0 2 155
GATTCCAAAAGATTAGAGTCGGGAGTCCAGTTTCAGAATGAAGCAGAGATTGCCGGGTAC
ATACTTGAATGTGAGAACCTTTTACGCCAGCATGTGATTGATGTACAGATTCTGATAGAT
GGGAAATACTACCAGGCCGATCAGCTGGTGCAGAG
INTRON 16 - 17 34,161,159 34,163,008 1,850
GTAGGAGCAATCCTTAGTTCTTCTT..........TCACATGCCTCTGTGTTCTTCCCAG
17 EXON 17 34,163,009 34,163,147 2 - 139
GGTTGCAAAGCTGCGTGATGAGATTATGGCCTTAAGGAACGAATGTTCTTCGGTGTACAG
CAAAGGACGCATGCTGACCACGGAACAGACCAAGCTCATGATATCAGGAATCACTCAAAG
CTTAAACTCAGGATTTGCA
3' upstream sequence
CAAACCTTACACCCCAGCCTGAACTCAGGGCTAACCCAGAGTTTAACCCCTTCCTTGACG
TCTTCTAGCGTGACTTCTGGCTTGTCGTCCGGGATGACTTCCCGCCTGACGCCGTCAGTT
ACTCCGGTGTATGCACCTGGGTTCCCTTCAGTTGTAGCTCCAAACTTCAGTTTAGGGGTA
GAGCCAAATTCATTACAGACTCTGAAGCTAATGCAGATCCGAAAGCCCCTTCTCAAGTCG
TCTTTGCTGGATCAGAACTTGACAGAAGAGGAAGTCAATATGAAATTTGTTCAAGATCTC
TTGAACTGGGTTGATGAGATGCAGGTAATGTTTATCTCAGTTGTCCAGTCTTATTCTTGA
AACAACAACTACTACTTTCTTCTTCTTTCTTCTCCTCCTCCTCCTTTTCTTCCTTTTCCT
CTTCCTTCTCCTTTTCCTCCTCCTCCTTCTTCTGTTAATCATTATTTTACTCTTTTAGGT
GCAGCTGGACCGCACTGAATGGGGCTCAGATTTGCCAAGTGTTGAAAGCCATTTAGAAAA
CCATAAAAATGTTCACCGAGCCATTGAAGAATTTGAATCCAGCCTTAAGGAAGCTAAAAT
TAGTGAGGTATATGAATTTTTGTGCTTTTAAATATTTTATCGTATTTTGATACTATTTTC
TTTTTACTTAAAGACCCTGTAACTCAGTAATTAGTATTAGTCAGAACTTAGCGTCCCTAA
CTCCCCATGCCTTTGCTTCCATATTTTAGATTCAGATGACAGCGCCTCTGAAACTCTCTT
ACACAGATAAGTTGCACAGATTAGAGAGTCAGTACGCTAAACTCTTGGTAAGTATTTCCT
TTTTCTTTTTAATTTGTTTGCTTTAAGTGTTCTGTTTTATGCCTGTTGCGAAAGGATCTG
ACTCTTACAATGGGTTTTCCTTAAAAAGAATACATCCAGAAATCAGGAGCGACACCTCGA
TACACTGCACAACTTTGTAACCCGCGCAACTAACGAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000194011
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 689 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information