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Target CDS Information

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Cross Reference
MGI_trans_name Il1r2-003
OTTP OTTMUSP00000068940
OTTT OTTMUST00000127997
UniParc UPI000011ECC3
Vega_transcript Il1r2-003, OTTMUST00000127997
Vega_translation 179118, OTTMUSP00000068940
Definition protein_id:ENSMUSP00000141785
translation:
MF

Chromosome 1
Length
Position(start - end)
6
40,102,429 - 40,102,436
Orient to Chromosome plus
Link Location : (1:40102429-40102436)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000194913
Reports
substitution
cSNPs0
Insertion19
Deletion20
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000194913)
MF
MSMv4 transcript
MF
homology100.00 (2 / 2)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000194913
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATTCCTTGATTGTTTTCTACTTCGTTTTCTCTGTTAGAAAAAAAGGGAGG
GGGGGGACTACATCAGAGAGCTGCTATCGAATGTCCACAGATCCAGGTAGCAGGGGACAG
ACAAGCATCTAGGATTCACCTGGAGGAAGGGAGTGGGCTGAGTTCTTACCTTGGGAGGCT
GAGCATCTGGGACAGAGCGCAGAGCACGTTGGAAGGCTTTGGGGACTTTCCTAGGGTGAT
TTTTTTTTTTAAAATGTACCTGATGCCTCTCAGAAACCATAGCTTCCAGGCAGACTGGGC
AGCACTCTAAGACCTGCCTGGCACACACAGTTATTAGATAAATGAATGTACTGGTTTTTT
TCCCTCCTCTGCTACTTAAAGTCTCTTCTCTTCAGTCCCCTACTCCTTTTTGAAGCCCAT
TTTTTCCCTTCTGAGCCCTAGCTTATATGTCTCTGACCTCAGCCTCCTTACACAGGGTGA
TCTTGGCCAGAGCTTCTCTCTGGGTTTCCTACTGTGTAAATAGAGGCAAAAGACTGGCCT
GTCCTTCCCAGTCCCTGCTTGCAGTGGGATGTTGCTGGCTTCCGTCCGTGTTCCATATCG
GCTTCCATCAACCTCACCCATCTCTAGCTCTGCCTTACCTGGAGGCTTGCTCTCCAGGAT
CAGCATCTTGTTCCTACAGGCATAAGTGCAGAAGAATGTCTTCCCCGAGGCCTCTCTGAG
CCTCACCTGCCTCAATGCATTCTTTTCCTTCTCTTAGCTGGTAGTGCTGCGGGGATGGAC
CCTCCCTCGTGTGCTGCAGGTTGTCCTGGGCTTCCCCAAGCCATTCTCATTCCCAGCTCA
CCCTCAAATCCTACTGTTTTGACAGCGAGAATGGAGCGATCACGTGACCACGTCCGACTT
TTTGACATTGAGAACGGAGCGATCACGTGATCACGTCCCTCCTCCCATACCCCAGGATAG
CAGCGCCAGCCTCTAGGGACAGCAGAAGCGGCAGAAGCGGGTGCTTTTTC
1 EXON 1 40,085,985 40,086,302 - - 318
AAGGAACTTCCGACTACTCTGTTTATCAGGTCTTCCAACTTGGCCTTTACCATATCTGCC
TACGACACGCATTGCTTGGCCCACGCAGATTTTTTTTTTTTTTTTTCCAGATTCAGTAGA
TGTGGGTGTGTGCCCAAGGACTCGATCACACGCTGGAACTGCTTGTATGGGAAGAGCCCT
TTTGGAGGACTATTTTCTTAGGAGATTAGATGAGGCTCATGCTCATTAGAGAGCCCAGGA
CGGAGGGAGTTATCTGGGGACAAGGAACTTGTGAGATCATTGCTTCTTGCATCTCCCGGG
AGTCTTGTAAACACGCAG
INTRON 1 - 2 40,086,303 40,102,388 16,086
GTGATTTTTATTCCTGAGAGTTAAT..........CTCCTCCCTCTTTTTCCTCCCATAG
2 EXON 2 40,102,389 40,102,436 - - 48
GCTCCAAGGGTCCTGTGCGCTCAGGAAGTTGGTGCGGACAATGTTCAT
3' upstream sequence
TTTGCTTGTGTTAGTAACTGGGGTTTCTGCTTTCACCACTCCAACAGTGGTGCACACAGG
AAAGGTTTCTGAATCCCCCATTACATCGGAGAAGCCCACAGGTGAGGAACGAAACGACCA
CTTCAGCTGGGAAAGGGCTTTGGGGAAAACAGGTTTCTGGCGGGGTTCGGTTAACAAGCA
GCAGACTACAAATATTAATGGCTTGGCAAGCGAGATAACAGATATTCCCCGTCCATGTGT
TGAAGGCCTGGGTGTGTGTCTTTCCTGCAAGGAAGAGAATGGAGAATATGACCAATTTGC
CCTTATTCAAAGATACCTTTACTTTGGAGTTTGAGATGTCCGGAGAAGACCGCAGACTTA
ATCCAGATTATAGTCAGTTAAAGTTGTTGAAGCTTTTAGCAGAACAGCAATCTCTAAGAC
AGATTAGAGACCACTGCTCTAAGATGGGTGAAGGAAGGATTTTTAAAATTAGTTAATTTA
TTTCCTTTACATCCTGATTGCAGCTTAGCTTACCCTCCCTCCTCTCCTCCCAGTCCACCT
CTCTCACCTCACCCCTGCCCTCCTTCTGCTTTCCTTATCTCCTTAGAAAAGGGAAGCTTT
CAATGGACCTCAACCAGCCTTGGCATGTCAAGTTGCAGCAGGACTAGGCACATCTTCTGT
TTGGGTCAGACAGACATCCCAGTTAGGGGAAAGGGATCCAAAGGCAGGCAGCAGAGTCAG
AGACAGCCGCTGCCCCTGCTGTTAGGAGTCTTCATGGACCACGCTGCACAACTGTTACAT
ATGTGCAGAGATCAGTCCCATGCATGCTCTCTGGTATACTTTGGGTCTCTGTGGGCCCCT
ATGGGCCCAAGTTAGTTGATTATGTGGGTTTTCTTGTGATGTCCCTGACCTCTCTGGCTC
TTTCAATCCTTTTGTCCCACTGTTCCATAGAATTCCCCAAGCTCTGCCATGGGTCTCTGC
ATCTGTTTCCATCAGTTGCTGGGTGAAGCCTCTCAGATGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000194913
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 2 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information