MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rnf149 (ENSMUSG00000048234)

Cross Reference

EMBL	AC119809
GO	GO:0005515, GO:0016020, GO:0016567, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Rnf149-005
OTTP	OTTMUSP00000068916
OTTT	OTTMUST00000127898
UCSC	uc007atl.3
UniParc	UPI00053BD62E
Uniprot/SPTREMBL	A0A0A6YWR9
Vega_transcript	OTTMUST00000127898, Rnf149-005

Vega_translation

179100, OTTMUSP00000068916

Definition

protein_id:ENSMUSP00000141667
translation:

MISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIF
YYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDV
IRILPCKGTLRIRRSYPPQKLPQEGFLLGI

Chromosome

Length
Position(start - end)

9,710
39,555,598 - 39,565,309

Orient to Chromosome

minus

Link

Location : (1:39555598-39565309)
/

Detail Map

name	Gm15832 (ENSMUSG00000085894)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm15832 note : predicted gene 15832 [Source:MGI Symbol;Acc:MGI:3834078]

name	Rnf149 (ENSMUSG00000048234)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rnf149 note : ring finger protein 149 [Source:MGI Symbol;Acc:MGI:2677438]

name	Gm23722 (ENSMUSG00000064936)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm23722 note : predicted gene, 23722 [Source:MGI Symbol;Acc:MGI:5453499]

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000062525

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195136

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195705

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14907.1 Uniprot/SWISSPROT:Q3U2C5 RefSeq_peptide:NP_001028307 RefSeq_mRNA:NM_001033135.3 Vega_transcript:OTTMUST00000051939 Vega_transcript:Rnf149-001 UCSC:uc007atl.3 Fantom:F630222A14 EMBL:AC119809 EMBL:AK155360 EMBL:AY155439 EMBL:BC115968 GO:GO:0005515 GO:GO:0008270 GO:GO:0016020 GO:GO:0016020 GO:GO:0016021 GO:GO:0016567 GO:GO:0016874 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Rnf149-001 Vega_translation:179099 Vega_translation:OTTMUSP00000024526 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0016874 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAI15969.1 protein_id:AAN75220.1 protein_id:BAE33216.1 OTTP:OTTMUSP00000024526 OTTT:OTTMUST00000051939 UniParc:UPI00001C2135
definition	note : transcript_id=ENSMUST00000062525 protein_id : ENSMUSP00000050388 translation : MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMVSIEYVDPQSNLTVWSVSESGRFGESSLREERQGLVGVPRAPAPAEGCAPDTRFVAPGALGNAPWVALVARGGCTFKDKVLAAARRNASAVVVYNLESNGNATEPMSHAGTGNIVVIMISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGDPEDTQELPTPEAAPGRVSVGNLSVTSQDEERSESNLPSSSSSESGPHRPCLKEDAGEDTALLGAGRSEPQHGGSIC

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127898 Vega_transcript:Rnf149-005 Uniprot/SPTREMBL:A0A0A6YWR9 UCSC:uc007atl.3 EMBL:AC119809 GO:GO:0005515 GO:GO:0016020 GO:GO:0016567 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 MGI_trans_name:Rnf149-005 Vega_translation:179100 Vega_translation:OTTMUSP00000068916 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068916 OTTT:OTTMUST00000127898 UniParc:UPI00053BD62E
definition	note : transcript_id=ENSMUST00000195136 protein_id : ENSMUSP00000141667 translation : MISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKGTLRIRRSYPPQKLPQEGFLLGI

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127899 Vega_transcript:Rnf149-004 Uniprot/SPTREMBL:A0A0A6YVR6 EMBL:AC119809 GO:GO:0005515 GO:GO:0016020 GO:GO:0016567 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 MGI_trans_name:Rnf149-004 Vega_translation:179101 Vega_translation:OTTMUSP00000068917 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068917 OTTT:OTTMUST00000127899 UniParc:UPI00053BD65B
definition	note : transcript_id=ENSMUST00000195705 protein_id : ENSMUSP00000141233 translation : MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMEQET

name
type	STS
link
xref	UniSTS_NUM:165075 UniSTS:AV037261 WI_MRC-RH:492338
definition	note : map_weight=1 standard_name : AV037261

name
type	STS
link
xref	UniSTS_NUM:162744 UniSTS:C76763 UniSTS:RH126032
definition	note : map_weight=1 standard_name : RH126032

name
type	misc_feature
link
xref
definition	note : contig AC119809.10 26843..154931(1)

name	Gm15832 (ENSMUSG00000085894)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000065796 Vega_transcript:OTTMUST00000065796 UCSC:uc007atk.1 Clone_based_vega_transcript:AC074336.1-001 MGI_trans_name:Gm15832-001 OTTT:OTTMUST00000065796
definition	note : processed_transcript note : transcript_id=ENSMUST00000146314

name	Rnf149 (ENSMUSG00000048234)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051940 Vega_transcript:OTTMUST00000051940 MGI_trans_name:Rnf149-002 OTTT:OTTMUST00000051940
definition	note : retained_intron note : transcript_id=ENSMUST00000153381

name	Gm23722 (ENSMUSG00000064936)
type	misc_RNA
link	VEGA Ensembl MGI
xref	MGI_trans_name:Gm23722-201 RNACentral:URS0000678ECC
definition	note : snoRNA note : transcript_id=ENSMUST00000083002

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195136

Reports
substitution
cSNPs	2
Insertion	13
Deletion	15
SNPs	+1kb 39577408(c.-12099C>T), 39577517(c.-12208C>T), 39577565(c.-12256G>T), 39577907(c.-12598C>T), 39577942(c.-12633T>C), 39578727(c.-13418T>G), 39578728(c.-13419C>A), 39578848(c.-13539A>G), 39579049(c.-13740A>C), 39579055(c.-13746A>G), 39579183(c.-13874A>G), 39579242(c.-13933G>A), 39579276(c.-13967C>G), 39579289(c.-13980C>T), 39579298(c.-13989G>A), 39579315(c.-14006A>C), 39579334(c.-14025C>T), 39579402(c.-14093C>T), 39579406(c.-14097C>T), 39579444(c.-14135T>C), 39579490(c.-14181T>C), 39579632(c.-14323T>C), 39579724(c.-14415A>G), 39580344(c.-15035C>A), 39580837(c.-15528A>G), 39580876(c.-15567A>G), 39580908(c.-15599T>G), 39581048(c.-15739A>G), 39581062(c.-15753A>G), 39581102(c.-15793T>C), 39581942(c.-16633C>T), 39581947(c.-16638A>G), 39582231(c.-16922C>A), 39582316(c.-17007C>T), 5'UTR CDS 39564087(c.258T>C), 39565138(c.172C>T), 3'UTR INTRON 39552660(c.121-145T>C), 39552797(c.121-282C>T), 39552847(c.121-332G>T), 39552920(c.121-405T>C), 39553046(c.121-531G>A), 39553529(c.121-1014A>T), 39553676(c.121-1161C>T), 39553775(c.121-1260G>A), 39554936(c.120+542A>G), 39555403(c.120+75T>C), 39556048(c.381-378T>A), 39556064(c.381-394A>G), 39556360(c.381-690A>G), 39556567(c.381-897C>A), 39557379(c.381-1709C>T), 39558032(c.381-2362G>T), 39558065(c.381-2395C>T), 39558538(c.380+2155A>G), 39558826(c.380+1867G>T), 39559627(c.380+1066A>T), 39559811(c.380+882C>T), 39559851(c.380+842A>T), 39560472(c.380+221C>T), 39561036(c.298-261A>C), 39561597(c.298-822T>C), 39562044(c.298-1269C>T), 39562653(c.297+1395A>C), 39562812(c.297+1236T>G), 39562855(c.297+1193G>A), 39562958(c.297+1090A>G), 39562979(c.297+1069A>G), 39562982(c.297+1066C>T), 39562987(c.297+1061A>G), 39563195(c.297+853A>T), 39563206(c.297+842T>A), 39563439(c.297+609C>A), 39563513(c.297+535T>C), 39563817(c.297+231T>C), 39563874(c.297+174C>T), 39563889(c.297+159T>C), 39563937(c.297+111T>C), 39564026(c.297+22T>G), 39564124(c.229-8T>C), 39564131(c.229-15T>G), 39566366(c.-23-1034A>T), 39566796(c.-23-1464G>A), 39566938(c.-23-1606T>A), 39567824(c.-23-2492G>T), 39568304(c.-23-2972T>G), 39568328(c.-23-2996A>C), 39568367(c.-23-3035C>G), 39568587(c.-23-3255T>C), 39568751(c.-23-3419A>T), 39569581(c.-23-4249A>G), 39570056(c.-23-4724G>C), 39570091(c.-23-4759G>T), 39570092(c.-23-4760G>C), 39570277(c.-23-4945C>G), 39570667(c.-23-5335T>G), 39570668(c.-23-5336A>T), 39570768(c.-23-5436T>C), 39570822(c.-23-5490C>T), 39571428(c.-24+5904G>A), 39572270(c.-24+5062G>C), 39572395(c.-24+4937G>A), 39572587(c.-24+4745A>G), 39572804(c.-24+4528C>T), 39572879(c.-24+4453T>C), 39572889(c.-24+4443A>G), 39573080(c.-24+4252G>T), 39573210(c.-24+4122T>C), 39574077(c.-24+3255G>T), 39575356(c.-24+1976G>A), 39575488(c.-24+1844C>T), 39575753(c.-24+1579T>C), 39576065(c.-24+1267T>A), 39576497(c.-24+835T>C), 39576564(c.-24+768A>G), 39576984(c.-24+348C>G), 39577080(c.-24+252A>C), 39577221(c.-24+111G>A), 39577326(c.-24+6T>C), -1kb 39547471(c.8127C>T), 39547499(c.8099C>T), 39548284(c.7314C>T), 39548529(c.7069T>C), 39548627(c.6971T>G), 39549401(c.6197G>T), 39549775(c.5823G>A), 39549908(c.5690T>C), 39550018(c.5580C>T), 39550021(c.5577C>T), 39550646(c.4952G>A), 39550706(c.4892G>A), 39550769(c.4829C>T), 39550775(c.4823C>G), 39550844(c.4754C>A), 39550983(c.4615C>T), 39551161(c.4437G>T), 39551545(c.4053G>C), 39551956(c.3642A>G), 39552026(c.3572T>C),
Insertions	+1kb 39577716 (c.-12408_-12407insGTTTG), 39581427 (c.-16119_-16118insG), 5'UTR CDS 3'UTR INTRON 39553640 (c.121-1129_121-1126dupCATA), 39559383 (c.380+1309dupT), 39559634 (c.380+1057_380+1058dupGG), 39559913 (c.380+779_380+780insT), 39564478 (c.229-364_229-363dupCA), 39567232 (c.-23-1902_-23-1901dupTT), 39570353 (c.-23-5030_-23-5022dupCACACACAC), 39571162 (c.-23-5831dupT), 39571478 (c.-24+5853dupG), 39576342 (c.-24+989_-24+990insTTT), -1kb 39548302 (c.7295_7296insC),
Deletions	+1kb 39581987 (c.-16680_-16679delTT), 5'UTR CDS 3'UTR INTRON 39555233 (c.120+244delT), 39557826 (c.381-2157delT), 39558707 (c.380+1984_380+1985delAC), 39559979 (c.380+713delA), 39559987 (c.380+704_380+705delAA), 39567622 (c.-23-2291delT), 39576255 (c.-24+1076delG), 39576258 (c.-24+1073delG), -1kb 39547994 (c.7595_7603delATATGCAGT), 39549524 (c.6071_6073delGGG), 39550210 (c.5384_5387delTGTG), 39550760 (c.4834_4837delTACC), 39551692 (c.3905delA), 39551929 (c.3667_3668delCA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	39564087 (p.Ile86Ile), 39565138 (p.Leu58Leu),
non-synonymous substitutions
B6 transcript (ENSMUST00000195136)	MISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIF YYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDV IRILPCKGTLRIRRSYPPQKLPQEGFLLGI*
MSMv4 transcript	MISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIF YYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDV IRILPCKGTLRIRRSYPPQKLPQEGFLLGI*
homology	100.00 (151 / 151)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195136


..........TGCCTGTGTGTGTATGTCTTCAGAATAGTGCCTAACAATGTATAGCTATG
CATTAAGTCCATCACTTAAGTGTCCACTTCTTAGGTTTAAATACATTTTGATATTCAGTA
GCTCATATATGAAGAGGTATTTTAAATGTCTTTTGATATTTGGTAACTCGGGTGTGATGT
CTCCTCAGCGTTATGGAGAGATCTCCTGTGTTTATTCGGGTCTAGTCAGACTTCACATTC
TTCAAAGGAAATACCTTTCAGGTTCGCTGGGGTTGATCTACCAGAGCATCTCAAATCTCA
GCTCTACTCAAGATTTTACCGGAGCAGAGTTACCATACTTGCATTTAACTATGTTTAGTG
TGTTCAGGATCTTTTAATGGTACACTGAAAGTATCCACCCACTGTGTTGTCGAAGGACTA
TCTACCAGCCACCATTTACCTCCAAACAAATCCTTTCCCTTTTTTCCCCCCTTTTGATTA
ATGTAGCACCTTCGTCTTCGTCCAAACAGAGGCACACATAAACTAAGGAGAAGGAAGAAA
GGGCTCGAAGGCAACCATTGAGAAAAGAGCAACAAAGAATTTAATATATTACAGAGTTTG
TAACAAAAGGCATCTGGACAACTTGACTTAGTGGTTTTTGTTGTTGTTTGCTTGTTTGTT
TAAGTGGTTTAGGCAGCCAGGCTTTTGCCGCGTGCCTTGCACAGTCAACTCCACCCTCTG
AGAAACTTTACACAACCGCAGTCCCACGCTGGCCGACCCGGAGCGCACAAACTTCCCCAG
ACTTGGGGACTCTGGCAGCAGTGTTGCACAACTCTCTGCAGCATCTGCAAGCTTCAGCTC
GGCCGCCCATAGCCCTGCGGCACAGACCCTGGCGCCTGCGCACTCCTCACGCCCGCGGGC
AGGGCCCCACCCCTTCCGTCGCCACGCCCCGGTCACGCCCCTCCAGGTGCGCGTGCGCTG
CGGGTCCGCCCCCGCCGCGCTCGGCGGTCTCTCGCGAGCCGCCGCCGTCT
CCTCAAAGCTGTGGGCCAGCCTGGA
GTGAGCCGCCTCGTTCTGACTCGCG..........TTCGTTGCTTTGTCCTTTTGTGCAG
GAACAGGAAACATAGTCGTCATTATGATTAGCTACCCAAAAGGACGGGAAATTTTTGATCTGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATAGAGATTGGTACTCGTCATATGCAGGAGTTCATCAGCGGTCAGTCTGTGGTGTTTGTGGCCATCGCCTTCATCACCATGATGATCATCTCATTAGCATGGTTGATATTCTATTATATACAGCGCTTCCTGTATACTGGCTCACAGTTTGGAAGTCAG
GTAGTTACGGATAATTTCATTTTGA..........TAATAATACTGTTTTCCCCCCCAAG
AATCATAGGAAGGAGACTAAGAAGGTTATCGGCCAGCTCCCTCTACACACTGTGAAGCATGGCGAGAAG
GTAATGCTTTCCTGTGCACTAGCTG..........TGTGACTCTCCCTCTCTCTCTGCAG
GGAATTGATGTCGATGCTGAGAATTGTGCAGTGTGTATTGAAAACTTTAAAGTCAAAGATGTTATCAGAATCCTGCCATGCAA
GTATGAATACTTTTTTCCTACTAAG..........CATTGTCTTTTGTCTGCCTCTCAAG
GGGGACCCTGAGGATACGCAGGAGCTACCCACCCCAGAAGCTGCCCCAGGAAGGGTTTCTGTTGGGAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAGCGAGTCTGGGCCACACCGCCCCTGTCTTAAAGAAGATGCAGGGGAGGACACAGCATTACTAG
GTATGTGGCTACAGATATAAGCGCA..........GATGGCTTTTGGTGCTTTGTTGTAG
GAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCATATGCTAGCAC
CATCCTCACTGACAGCCTCACCGACAGAGCCTTGGCTTGAACAGGACATTCAGTTTTTTA
CTCTAGGGCAGAGTTTGTATACTTGAAAACAGTGGACTTTATTTTACTTTACCTTTCAGA
TTCAGGTTTGATATACAAAGGGCTGAGATATTTTATTCCTAAAAGACTTTTAATTAGCCT
TCATCTATTTATCTACTAAATTATGATGTCTATCATAAGTTTTGTTGTATCACCTGTCAC
AGATGTATGTGGAGGGGTTGTTTCTGAGTACTAGACTAGCCTCTGTGGTATAAAACAAGA
GTCTGTCTCTTGGGCTTTTTAGACAGAGCTCACCGAGTTGAAGTGTGAAGTGTAGTTCCT
TATTGATCACATGAACGTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTG
CCGTGGGCAGTGGTGCAAACTGCGGCTGAGGCCCGAGGAGCTTGAGTTCAAGCCTGCTTC
GGGCTGTGTAGCCAGACTGCTACAAAGGGGTTGAGAGAGAGAGAGAGAGAGAGAGAGCAA
GAGAGAGAGAGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGT
GTAGTCTGCAGAGACTTCAGAACCACACATTCCTTCTTATGTGGAATTGTGAAAAGAACA
CTAGATGATTTTATGATTTACATTTCTACTTTTATTGCCTAATTTCTTTTCACACTTGGA
AGGAGAAGGGAATTTATCCATGTTTTTCTACAAACTAAAAAAAAAAAAAAAAAAAACCTG
GCAAAAAATGCCATATTGCATGTTAAAAAAAGCATTAAAATATGGATTCATTAAGAAAAT
CAAGTAGGCATACAGTAATGTCTTTAAATGATTAGTATATTTTGGTGGATTTGATCTTTA
CAATTAAAAATACTTAATTAAAACTTTGATTCTGTTGTTGTTAGACTAAAATAACATTTT
CCTAAAGAGATTTTAAGCCGATTCAATACTGTGACCTTTT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGCCTGTGTGTGTATGTCTTCAGAATAGTGCCTAACAATGTATAGCTATG CATTAAGTCCATCACTTAAGTGTCCACTTCTTAGGTTTAAATACATTTTGATATTCAGTA GCTCATATATGAAGAGGTATTTTAAATGTCTTTTGATATTTGGTAACTCGGGTGTGATGT CTCCTCAGCGTTATGGAGAGATCTCCTGTGTTTATTCGGGTCTAGTCAGACTTCACATTC TTCAAAGGAAATACCTTTCAGGTTCGCTGGGGTTGATCTACCAGAGCATCTCAAATCTCA GCTCTACTCAAGATTTTACCGGAGCAGAGTTACCATACTTGCATTTAACTATGTTTAGTG TGTTCAGGATCTTTTAATGGTACACTGAAAGTATCCACCCACTGTGTTGTCGAAGGACTA TCTACCAGCCACCATTTACCTCCAAACAAATCCTTTCCCTTTTTTCCCCCCTTTTGATTA ATGTAGCACCTTCGTCTTCGTCCAAACAGAGGCACACATAAACTAAGGAGAAGGAAGAAA GGGCTCGAAGGCAACCATTGAGAAAAGAGCAACAAAGAATTTAATATATTACAGAGTTTG TAACAAAAGGCATCTGGACAACTTGACTTAGTGGTTTTTGTTGTTGTTTGCTTGTTTGTT TAAGTGGTTTAGGCAGCCAGGCTTTTGCCGCGTGCCTTGCACAGTCAACTCCACCCTCTG AGAAACTTTACACAACCGCAGTCCCACGCTGGCCGACCCGGAGCGCACAAACTTCCCCAG ACTTGGGGACTCTGGCAGCAGTGTTGCACAACTCTCTGCAGCATCTGCAAGCTTCAGCTC GGCCGCCCATAGCCCTGCGGCACAGACCCTGGCGCCTGCGCACTCCTCACGCCCGCGGGC AGGGCCCCACCCCTTCCGTCGCCACGCCCCGGTCACGCCCCTCCAGGTGCGCGTGCGCTG CGGGTCCGCCCCCGCCGCGCTCGGCGGTCTCTCGCGAGCCGCCGCCGTCT
1	EXON 1	39,577,332	39,577,356	-	-	25	CCTCAAAGCTGTGGGCCAGCCTGGA
	INTRON 1 - 2	39,565,333	39,577,331			11,999	GTGAGCCGCCTCGTTCTGACTCGCG..........TTCGTTGCTTTGTCCTTTTGTGCAG
2	EXON 2	39,565,082	39,565,332	-	0	251	GAACAGGAAACATAGTCGTCATTATGATTAGCTACCCAAAAGGACGGGAAATTTTTGATC TGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATAGAGATTGGTACTCGTCATATGCAGG AGTTCATCAGCGGTCAGTCTGTGGTGTTTGTGGCCATCGCCTTCATCACCATGATGATCA TCTCATTAGCATGGTTGATATTCTATTATATACAGCGCTTCCTGTATACTGGCTCACAGT TTGGAAGTCAG
	INTRON 2 - 3	39,564,117	39,565,081			965	GTAGTTACGGATAATTTCATTTTGA..........TAATAATACTGTTTTCCCCCCCAAG
3	EXON 3	39,564,048	39,564,116	0	0	69	AATCATAGGAAGGAGACTAAGAAGGTTATCGGCCAGCTCCCTCTACACACTGTGAAGCAT GGCGAGAAG
	INTRON 3 - 4	39,560,776	39,564,047			3,272	GTAATGCTTTCCTGTGCACTAGCTG..........TGTGACTCTCCCTCTCTCTCTGCAG
4	EXON 4	39,560,693	39,560,775	0	2	83	GGAATTGATGTCGATGCTGAGAATTGTGCAGTGTGTATTGAAAACTTTAAAGTCAAAGAT GTTATCAGAATCCTGCCATGCAA
	INTRON 4 - 5	39,555,671	39,560,692			5,022	GTATGAATACTTTTTTCCTACTAAG..........CATTGTCTTTTGTCTGCCTCTCAAG
5	EXON 5	39,555,478	39,555,670	2	-	193	GGGGACCCTGAGGATACGCAGGAGCTACCCACCCCAGAAGCTGCCCCAGGAAGGGTTTCT GTTGGGAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCA TCTTCCTCGAGCGAGTCTGGGCCACACCGCCCCTGTCTTAAAGAAGATGCAGGGGAGGAC ACAGCATTACTAG
	INTRON 5 - 6	39,552,516	39,555,477			2,962	GTATGTGGCTACAGATATAAGCGCA..........GATGGCTTTTGGTGCTTTGTTGTAG
6	EXON 6	39,552,469	39,552,515	-	-	47	GAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCATATGCTAGCAC
	3' upstream sequence						CATCCTCACTGACAGCCTCACCGACAGAGCCTTGGCTTGAACAGGACATTCAGTTTTTTA CTCTAGGGCAGAGTTTGTATACTTGAAAACAGTGGACTTTATTTTACTTTACCTTTCAGA TTCAGGTTTGATATACAAAGGGCTGAGATATTTTATTCCTAAAAGACTTTTAATTAGCCT TCATCTATTTATCTACTAAATTATGATGTCTATCATAAGTTTTGTTGTATCACCTGTCAC AGATGTATGTGGAGGGGTTGTTTCTGAGTACTAGACTAGCCTCTGTGGTATAAAACAAGA GTCTGTCTCTTGGGCTTTTTAGACAGAGCTCACCGAGTTGAAGTGTGAAGTGTAGTTCCT TATTGATCACATGAACGTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTG CCGTGGGCAGTGGTGCAAACTGCGGCTGAGGCCCGAGGAGCTTGAGTTCAAGCCTGCTTC GGGCTGTGTAGCCAGACTGCTACAAAGGGGTTGAGAGAGAGAGAGAGAGAGAGAGAGCAA GAGAGAGAGAGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGT GTAGTCTGCAGAGACTTCAGAACCACACATTCCTTCTTATGTGGAATTGTGAAAAGAACA CTAGATGATTTTATGATTTACATTTCTACTTTTATTGCCTAATTTCTTTTCACACTTGGA AGGAGAAGGGAATTTATCCATGTTTTTCTACAAACTAAAAAAAAAAAAAAAAAAAACCTG GCAAAAAATGCCATATTGCATGTTAAAAAAAGCATTAAAATATGGATTCATTAAGAAAAT CAAGTAGGCATACAGTAATGTCTTTAAATGATTAGTATATTTTGGTGGATTTGATCTTTA CAATTAAAAATACTTAATTAAAACTTTGATTCTGTTGTTGTTAGACTAAAATAACATTTT CCTAAAGAGATTTTAAGCCGATTCAATACTGTGACCTTTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195136

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 151 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information