MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Sema4c (ENSMUSG00000026121)

Cross Reference

EMBL	AC084391
GO	GO:0005515, GO:0005615, GO:0032874, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Sema4c-004
OTTP	OTTMUSP00000022845
OTTT	OTTMUST00000049352
UniParc	UPI0000F22055
Uniprot/SPTREMBL	A0A0A6YX48
Vega_transcript	OTTMUST00000049352, Sema4c-004
Vega_translation	178987, OTTMUSP00000022845

Definition

protein_id:ENSMUSP00000141833
translation:

MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSG

Chromosome

1

Length
Position(start - end)

107
36,555,932 - 36,556,040

Orient to Chromosome

minus

Link

Location : (1:36555932-36556040)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000195339

Reports
substitution
cSNPs	0
Insertion	7
Deletion	8
SNPs	+1kb 36558497(c.-2457T>C), 36558524(c.-2484A>G), 36559139(c.-3099A>G), 36559170(c.-3130G>A), 36559202(c.-3162A>G), 36559205(c.-3165T>C), 36559302(c.-3262T>C), 36559612(c.-3572T>C), 36560042(c.-4002G>A), 36560115(c.-4075G>T), 36560121(c.-4081T>G), 36560128(c.-4088T>G), 36560523(c.-4483A>G), 36561381(c.-5341T>C), 36561624(c.-5584C>T), 36561979(c.-5939C>G), 36562073(c.-6033T>C), 36562231(c.-6191G>A), 36562612(c.-6572C>T), 36562812(c.-6772G>C), 36563135(c.-7095A>G), 5'UTR 36556874(c.-109T>C), CDS 3'UTR INTRON 36556123(c.-37-46C>T), 36556362(c.-37-285T>G), 36556761(c.-38+42C>T), 36556957(c.-164-28T>C), 36557049(c.-164-120T>G), 36557936(c.-165+80A>G), -1kb 36551075(c.4857A>G), 36551260(c.4672T>C), 36551261(c.4671A>G), 36551306(c.4626G>A), 36551522(c.4410C>T), 36551777(c.4155G>A), 36551916(c.4016C>T), 36552102(c.3830A>G), 36552203(c.3729A>G), 36552616(c.3316G>T), 36552632(c.3300G>A), 36552859(c.3073A>G), 36552916(c.3016T>G), 36553193(c.2739A>G), 36553194(c.2738C>T), 36553221(c.2711G>A), 36553324(c.2608A>G), 36553592(c.2340A>G), 36553725(c.2207C>T), 36553758(c.2174T>C), 36553772(c.2160T>G), 36553874(c.2058T>C), 36554054(c.1878A>G), 36554067(c.1865A>G), 36554512(c.1420C>T), 36554538(c.1394G>C), 36554875(c.1057C>T), 36554930(c.1002A>G), 36555011(c.921T>C), 36555034(c.898T>G), 36555213(c.719T>C), 36555345(c.587T>G), 36555470(c.462A>G), 36555638(c.294G>C), 36555663(c.269G>C), 36555841(c.91A>C),
Insertions	+1kb 36560129 (c.-4090_-4089insGTGG), 36560556 (c.-4519_-4517dupAAA), 36563179 (c.-7140_-7139insCCT), 5'UTR CDS 3'UTR INTRON 36556375 (c.-37-299dupG), -1kb 36553359 (c.2572_2573insC), 36555428 (c.503dupC), 36555694 (c.237_*238insGACAGACA),
Deletions	+1kb 36558825 (c.-2787_-2786delAA), 36559202 (c.-3163delT), 36559667 (c.-3631_-3628delTTGT), 36560318 (c.-4279delT), 5'UTR CDS 3'UTR INTRON 36557312 (c.-164-384delC), -1kb 36553401 (c.2527_2530delACTT), 36553406 (c.2522_2525delTACT), 36554790 (c.1139_1141delTGG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000195339)	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSG
MSMv4 transcript	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSG
homology	100.00 (36 / 36)

Exon Detail Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000195339

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TAGCCCAGAACAAAAGCTGCTGTCGGACTGATTTATACTCCAGATTTTAC TTATGGGGTCTGAAGTGTTTTTTCCCCTCCAGGACTGCCCCCTGGGGCTCAAAGTTACCA CGGAAACCTCCAGGCCTCCTTCCCTTCGTCCCTGTCCTTTGATTCTGGTTAGGGGTGGTC TCCAGGTACCGCTGGGGCAGTTTCCCCGAGGTTTCTCAGTCCACCTGCCCACTGGAGGAC CAGCTGGCTGGAAGGATTTGCCAGCCAGCACCGTCCAGGAGGCCACAGCTACAAGTTACT TCTAGGAGCGCCTGTGGGCGGAGGCTGGCAGTTCTGAAGGTGGTGGTGGTTCGCTGCGTG GCTCCCTCCAGCCTCTTTCATCTGAACCGTGGCGCGCTCGTGCCTCTAGTTAATCAGCCT TCCAAGCCACACCAAGAGTCATTTCCCGGGGGTAGGCTCTGCTGGAGCCTGGAAACTAGG AGCTGCCTGCAGTCTTGGGGTCTCCTCTGCCTGTGAGCTGCTCCTTCCAGTCCAAGGGTT AGGGCCAGAAAGGAGGACAACTTTGGAGTCAAAAGACTGACCACTGTGGTTAGCACCTGA GAGAACCTTCAGTTTCTTCTCTTGCTACGCCACCCCCTTCGGGTACAAGTCCCAAAATGG TTTGCCAGTTTTCGTTCCCGTAACTGGAGCGTGGGGAAGCCCCTCAACCCTTCCAGAGAG CCCATCCCGCCTCAGGGCTTGAAGGCACACTTCACCAGGTGAGCGCAGTTCGTGCAGTTC CCGGTGGCAACGCCTGGAGTCCCTCCCCGCCCCCCACCCCGCCCCCTCCCCGCCTCCGGC CGCTGTGGCGCAGACCTTGACTCACGAGCTGCAAGAGTCGTAAAGGGTCCCCAAGCCTCA GTGCCGGGTAAGCAAGGCAGCGGGTCGCAGCCCCCTCCTGGGCGGGCCTTCGCGTCCCGC CCCCGGCCACCACTCGACACCCTCTGCCTGACGTCAAGGGGTTGGGGGCG
1	EXON 1	36,558,016	36,558,250	-	-	235	GAGAGCGGCGGTGGCGGCGGCTGCAGCGGAGAAAGAACCGGCGCCCGGCGCGGTGGAGCG CCGAATCCGAGCTCAGGGGCGCCGAGAGCCGTGCTGAGACCGAGGGGCGGTGGCACGGGA CAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGACG GTGGCCGGAGTCAAACGCGAGGGCAGCGCCCAGGGATTGGAGCTGCACGAAAGAG
	INTRON 1 - 2	36,556,930	36,558,015			1,086	GTGAGTGAGGCCGGAGCGGTGGGGC..........TTTGTGGGCATCCCCTGTTGTCCAG
2	EXON 2	36,556,803	36,556,929	-	-	127	GAGAACCCCGCTTCGGCCTCCCCAACCCATTTCACTTCCCTCCACGATCCCGCTCCCGCG GAGGCGAGGAGATTCCCAGACAGAAGCCTGGAACTGACTCGTGGCCCGGTCGCCTCTCTG CGGGAGG
	INTRON 2 - 3	36,556,078	36,556,802			725	GTCAGTGTCTTGTAGAAGGCTGTTG..........TGACCAGTTTCTTTTCCTTCAGCAG
3	EXON 3	36,555,932	36,556,077	-	-	146	GGCTGCTGGACTGAAGTTTAGACCCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTG GCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATCGGGGCTGAGATGTGGTGGAACCTTGT GCCCCGGAAGACAGTATCTTCTGGGG
	3' upstream sequence						GTGAGTGCCTGAAGCATGGGAGGCAGGGCCAGAGGGAGGCTGGGATAGACTGCTGGGGGA AGGGCGAGGAGGGGAGTGATGCTTGCTTGCCGGAAGGAGCTGCTGCTGAGGAATTACCCC CAAGCATGCACCTTTACACCGATATGTGTGGCTGTGGCTTTCTAAGAAACGCGAGTGGCC CCAGGGGCCCAGAACTGGTAGTGCTGGTCTAGACCTGGGCTTTGCCCCCTTCTGACACTG GGATAACTTTATGGGATCTCTTACCAGCCCACCCCCACCCTCACCCAGACCTGCCTGGCC TGGTGTGCAAGGGAGGTAGTTTCTGAATCAACCTCCCTGTTCCTCACTTGAATTGTCTCT CTTGCTTGGAAGCCTAGAGAGAGAAACCTGAACCCCAGGGCAAGTGTAAACCTAACCCTA TCTCCAGTCTTTCTAGCTGTCTGTCCCTAGAAGCCCCTTTAGTTCACCCTAATGGTCTCC TCTGCTGCTCTAACACTGGAGCCTTCTGATGGCTCTGGGTGGACACATATAAGCTCGCGC TTCGTGGGGGAGGAGACAGAGTGAACCAGACAGCTCTCCTTTGCTTGCGCGCACACCTGT ATGGAGAGGTGATGTCAGGTGTTTGTATCATCTCTGTGCTCCTGGGACATGGGATGAGCT CACCTCCCACAGGCTACACTCAGCTGCTATTAAAGCCCCTCCCATGTCGACCCAACTCCC GTTGGTCACTGCCTCCCGACCCTGAAGCTGGCTTAAGTAGGGATCCTGTGAACAGGTGTG CAGGTATACGGTCCTCTGACAGGTTACATGACTGTATGTATGATCACGCCCTACGTGTGC TGGCCGGAAGCACAACTTCCCAGGCTTCAGCACCACCTCTGAGTCTCAGGTTCCTTTGAT CTCCCAGTCCTAACCTCTTCCTCCTTCTCCACACGCCACTTTGCCAGTCCCCTGCCCATC TGTGCGTGTGTCTCTGAAAGCCTGGATTGGTGCCTGCTGG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000195339

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 36 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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