MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rnf149 (ENSMUSG00000048234)

Cross Reference

EMBL	AC119809
GO	GO:0005515, GO:0016020, GO:0016567, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Rnf149-004
OTTP	OTTMUSP00000068917
OTTT	OTTMUST00000127899
UniParc	UPI00053BD65B
Uniprot/SPTREMBL	A0A0A6YVR6
Vega_transcript	OTTMUST00000127899, Rnf149-004
Vega_translation	179101, OTTMUSP00000068917

Definition

protein_id:ENSMUSP00000141233
translation:

MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMEQET

Chromosome

Length
Position(start - end)

11,955
39,565,318 - 39,577,274

Orient to Chromosome

minus

Link

Location : (1:39565318-39577274)
/

Detail Map

name	Rnf149 (ENSMUSG00000048234)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rnf149 note : ring finger protein 149 [Source:MGI Symbol;Acc:MGI:2677438]

name	Gm23722 (ENSMUSG00000064936)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm23722 note : predicted gene, 23722 [Source:MGI Symbol;Acc:MGI:5453499]

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000062525

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195136

name	Rnf149 (ENSMUSG00000048234)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195705

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14907.1 Uniprot/SWISSPROT:Q3U2C5 RefSeq_peptide:NP_001028307 RefSeq_mRNA:NM_001033135.3 Vega_transcript:OTTMUST00000051939 Vega_transcript:Rnf149-001 UCSC:uc007atl.3 Fantom:F630222A14 EMBL:AC119809 EMBL:AK155360 EMBL:AY155439 EMBL:BC115968 GO:GO:0005515 GO:GO:0008270 GO:GO:0016020 GO:GO:0016020 GO:GO:0016021 GO:GO:0016567 GO:GO:0016874 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Rnf149-001 Vega_translation:179099 Vega_translation:OTTMUSP00000024526 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0016874 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAI15969.1 protein_id:AAN75220.1 protein_id:BAE33216.1 OTTP:OTTMUSP00000024526 OTTT:OTTMUST00000051939 UniParc:UPI00001C2135
definition	note : transcript_id=ENSMUST00000062525 protein_id : ENSMUSP00000050388 translation : MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMVSIEYVDPQSNLTVWSVSESGRFGESSLREERQGLVGVPRAPAPAEGCAPDTRFVAPGALGNAPWVALVARGGCTFKDKVLAAARRNASAVVVYNLESNGNATEPMSHAGTGNIVVIMISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGDPEDTQELPTPEAAPGRVSVGNLSVTSQDEERSESNLPSSSSSESGPHRPCLKEDAGEDTALLGAGRSEPQHGGSIC

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127898 Vega_transcript:Rnf149-005 Uniprot/SPTREMBL:A0A0A6YWR9 UCSC:uc007atl.3 EMBL:AC119809 GO:GO:0005515 GO:GO:0016020 GO:GO:0016567 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 MGI_trans_name:Rnf149-005 Vega_translation:179100 Vega_translation:OTTMUSP00000068916 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068916 OTTT:OTTMUST00000127898 UniParc:UPI00053BD62E
definition	note : transcript_id=ENSMUST00000195136 protein_id : ENSMUSP00000141667 translation : MISYPKGREIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKGTLRIRRSYPPQKLPQEGFLLGI

name	Rnf149 (ENSMUSG00000048234) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127899 Vega_transcript:Rnf149-004 Uniprot/SPTREMBL:A0A0A6YVR6 EMBL:AC119809 GO:GO:0005515 GO:GO:0016020 GO:GO:0016567 GO:GO:0031647 GO:GO:0035690 GO:GO:0043409 GO:GO:0061630 GO:GO:0070062 MGI_trans_name:Rnf149-004 Vega_translation:179101 Vega_translation:OTTMUSP00000068917 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068917 OTTT:OTTMUST00000127899 UniParc:UPI00053BD65B
definition	note : transcript_id=ENSMUST00000195705 protein_id : ENSMUSP00000141233 translation : MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMEQET

name
type	misc_feature
link
xref
definition	note : contig AC119809.10 26843..154931(1)

name	Gm23722 (ENSMUSG00000064936)
type	misc_RNA
link	VEGA Ensembl MGI
xref	MGI_trans_name:Gm23722-201 RNACentral:URS0000678ECC
definition	note : snoRNA note : transcript_id=ENSMUST00000083002

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195705

Reports
substitution
cSNPs	1
Insertion	8
Deletion	4
SNPs	+1kb 39577326(c.-52T>C), 39577408(c.-134C>T), 39577517(c.-243C>T), 39577565(c.-291G>T), 39577907(c.-633C>T), 39577942(c.-668T>C), 39578727(c.-1453T>G), 39578728(c.-1454C>A), 39578848(c.-1574A>G), 39579049(c.-1775A>C), 39579055(c.-1781A>G), 39579183(c.-1909A>G), 39579242(c.-1968G>A), 39579276(c.-2002C>G), 39579289(c.-2015C>T), 39579298(c.-2024G>A), 39579315(c.-2041A>C), 39579334(c.-2060C>T), 39579402(c.-2128C>T), 39579406(c.-2132C>T), 39579444(c.-2170T>C), 39579490(c.-2216T>C), 39579632(c.-2358T>C), 39579724(c.-2450A>G), 39580344(c.-3070C>A), 39580837(c.-3563A>G), 39580876(c.-3602A>G), 39580908(c.-3634T>G), 39581048(c.-3774A>G), 39581062(c.-3788A>G), 39581102(c.-3828T>C), 39581942(c.-4668C>T), 39581947(c.-4673A>G), 39582231(c.-4957C>A), 5'UTR CDS 39577221(c.54G>A), 3'UTR 39565138(c.180C>T), INTRON 39566366(c.121-1034A>T), 39566796(c.121-1464G>A), 39566938(c.121-1606T>A), 39567824(c.121-2492G>T), 39568304(c.121-2972T>G), 39568328(c.121-2996A>C), 39568367(c.121-3035C>G), 39568587(c.121-3255T>C), 39568751(c.121-3419A>T), 39569581(c.121-4249A>G), 39570056(c.121-4724G>C), 39570091(c.121-4759G>T), 39570092(c.121-4760G>C), 39570277(c.121-4945C>G), 39570667(c.121-5335T>G), 39570668(c.121-5336A>T), 39570768(c.121-5436T>C), 39570822(c.121-5490C>T), 39571428(c.120+5727G>A), 39572270(c.120+4885G>C), 39572395(c.120+4760G>A), 39572587(c.120+4568A>G), 39572804(c.120+4351C>T), 39572879(c.120+4276T>C), 39572889(c.120+4266A>G), 39573080(c.120+4075G>T), 39573210(c.120+3945T>C), 39574077(c.120+3078G>T), 39575356(c.120+1799G>A), 39575488(c.120+1667C>T), 39575753(c.120+1402T>C), 39576065(c.120+1090T>A), 39576497(c.120+658T>C), 39576564(c.120+591A>G), 39576984(c.120+171C>G), 39577080(c.120+75A>C), -1kb 39560472(c.4846C>T), 39561036(c.4282A>C), 39561597(c.3721T>C), 39562044(c.3274C>T), 39562653(c.2665A>C), 39562812(c.2506T>G), 39562855(c.2463G>A), 39562958(c.2360A>G), 39562979(c.2339A>G), 39562982(c.2336C>T), 39562987(c.2331A>G), 39563195(c.2123A>T), 39563206(c.2112T>A), 39563439(c.1879C>A), 39563513(c.1805T>C), 39563817(c.1501T>C), 39563874(c.1444C>T), 39563889(c.1429T>C), 39563937(c.1381T>C), 39564026(c.1292T>G), 39564087(c.1231T>C), 39564124(c.1194T>C), 39564131(c.1187T>G),
Insertions	+1kb 39577716 (c.-443_-442insGTTTG), 39581427 (c.-4154_-4153insG), 5'UTR CDS 3'UTR INTRON 39567232 (c.121-1902_121-1901dupTT), 39570353 (c.121-5030_121-5022dupCACACACAC), 39571162 (c.121-5831dupT), 39571478 (c.120+5676dupG), 39576342 (c.120+812_120+813insTTT), -1kb 39564478 (c.838_839dupCA),
Deletions	+1kb 39581987 (c.-4715_-4714delTT), 5'UTR CDS 3'UTR INTRON 39567622 (c.121-2291delT), 39576255 (c.120+899delG), 39576258 (c.120+896delG), -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	39577221 (p.Ala18Ala),
non-synonymous substitutions
B6 transcript (ENSMUST00000195705)	MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMEQET*
MSMv4 transcript	MAARRRPAAGVGARDALAVLALALCTPGVGGGALEWYSAMEQET*
homology	100.00 (45 / 45)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195705

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TAAGTCCATCACTTAAGTGTCCACTTCTTAGGTTTAAATACATTTTGATA TTCAGTAGCTCATATATGAAGAGGTATTTTAAATGTCTTTTGATATTTGGTAACTCGGGT GTGATGTCTCCTCAGCGTTATGGAGAGATCTCCTGTGTTTATTCGGGTCTAGTCAGACTT CACATTCTTCAAAGGAAATACCTTTCAGGTTCGCTGGGGTTGATCTACCAGAGCATCTCA AATCTCAGCTCTACTCAAGATTTTACCGGAGCAGAGTTACCATACTTGCATTTAACTATG TTTAGTGTGTTCAGGATCTTTTAATGGTACACTGAAAGTATCCACCCACTGTGTTGTCGA AGGACTATCTACCAGCCACCATTTACCTCCAAACAAATCCTTTCCCTTTTTTCCCCCCTT TTGATTAATGTAGCACCTTCGTCTTCGTCCAAACAGAGGCACACATAAACTAAGGAGAAG GAAGAAAGGGCTCGAAGGCAACCATTGAGAAAAGAGCAACAAAGAATTTAATATATTACA GAGTTTGTAACAAAAGGCATCTGGACAACTTGACTTAGTGGTTTTTGTTGTTGTTTGCTT GTTTGTTTAAGTGGTTTAGGCAGCCAGGCTTTTGCCGCGTGCCTTGCACAGTCAACTCCA CCCTCTGAGAAACTTTACACAACCGCAGTCCCACGCTGGCCGACCCGGAGCGCACAAACT TCCCCAGACTTGGGGACTCTGGCAGCAGTGTTGCACAACTCTCTGCAGCATCTGCAAGCT TCAGCTCGGCCGCCCATAGCCCTGCGGCACAGACCCTGGCGCCTGCGCACTCCTCACGCC CGCGGGCAGGGCCCCACCCCTTCCGTCGCCACGCCCCGGTCACGCCCCTCCAGGTGCGCG TGCGCTGCGGGTCCGCCCCCGCCGCGCTCGGCGGTCTCTCGCGAGCCGCCGCCGTCTCCT CAAAGCTGTGGGCCAGCCTGGAGTGAGCCGCCTCGTTCTGACTCGCGCTC
1	EXON 1	39,577,155	39,577,303	-	0	149	TTCTTCCTCAGTAGCCCGGCCGGGCGGCCATGGCGGCGCGGCGGCGGCCCGCGGCCGGCG TGGGAGCCCGGGACGCACTCGCAGTGCTGGCGCTGGCCTTGTGTACTCCCGGGGTGGGCG GCGGGGCGCTCGAGTGGTACTCGGCCATG
	INTRON 1 - 2	39,565,333	39,577,154			11,822	GTGAGCATCGAATACGTGGACCCGC..........TTCGTTGCTTTGTCCTTTTGTGCAG
2	EXON 2	39,565,093	39,565,332	0	-	240	GAACAGGAAACATAGTCGTCATTATGATTAGCTACCCAAAAGGACGGGAAATTTTTGATC TGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATAGAGATTGGTACTCGTCATATGCAGG AGTTCATCAGCGGTCAGTCTGTGGTGTTTGTGGCCATCGCCTTCATCACCATGATGATCA TCTCATTAGCATGGTTGATATTCTATTATATACAGCGCTTCCTGTATACTGGCTCACAGT
	3' upstream sequence						TTGGAAGTCAGGTAGTTACGGATAATTTCATTTTGATTTTTAAATGATAGCTCATAAATA TAATCTATATGCTACTTGAAGTTACATTTAACCACACTAATTTCAGTTTGTTTATTGAAG TCATATGATTTTGATAAAATTTTTAATTGGGTTACTTTTTTATACATTTGGTTTCTGCAG GTACCTATACCCTCTGTCTTTATGTAGACAGAGGGAACTAGACAAAGGGCATGTGAGCAT GAACACGTGTCCATTTTCTGCTTGACATAAGGCCGAGGGCTGCTTTGTGTCTGCTTTGTG TCTGACAGGCCATCAATCTGAAGGCAGGCTCTTCCTCTGTAGCAGCATAGAGAAGAGCCA GAGGCTTCCAGTGGCACACTAGGGCCTAATGCACAGTATGGTTCCTGGCCTGATAACCAG GCAGGACTCTTTCTTCTCGGGCACCATTGGTGGAGAGTGGATGGTACCTTCTTCCTGGGC ATCATTACTTTTTGCCAATTTTTAAGTGTAGGACTTGTTTTCTGGAAGTTGAAAAAGTGT GGCTAAATGACAATTCATGATTAGAGTGCTAGAGTTCTTGACTTCCATTTCAATGTCACA CACACACACACACAAAAGGGTATGGAATTAGAAGCATGGGTTGGGGATATGGCCCTTGGT AAGGTGCTTGCTTAGCATTTGTGAGGCCCTTAATCTCACTATTGCATATTAGCAAGTAAG TAAATAAATATATTCTTAGCTGGGCATGGTAGCTCAGGCCTGTAATCCTGGGTAGCTTCA AGCTCAAGGCCAATCAGGGCTTTAAAGTGAAGCATCATATCTTAATAATGGTAATGATAA TAATAAAATAGCTTATATGTTTATATGGCTCTTTTATATATTAAAAGTTAATGTTTTTTT CTGAGCTATTTTCATAAACTGTAGTGTGTGGGTTACTTTAAACAGACTATTTAATAATAC TGTTTTCCCCCCCAAGAATCATAGGAAGGAGACTAAGAAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rnf149 (ENSMUSG00000048234)
Transcript ID	ENSMUST00000195705

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 45 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information