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Target CDS Information

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Cross Reference
EMBL AC161534
MGI_trans_name Il1r2-002
OTTP OTTMUSP00000068939
OTTT OTTMUST00000127996
UCSC uc007atu.2
UniParc UPI00053BD6F8
Uniprot/SPTREMBL A0A0A6YX23
Vega_transcript Il1r2-002, OTTMUST00000127996
Vega_translation 179117, OTTMUSP00000068939
Definition protein_id:ENSMUSP00000141804
translation:
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTETHPTVSKCLWNSRSLRILKHLCL
MSPTCKSQLSPPPGY

Chromosome 1
Length
Position(start - end)
9,643
40,102,429 - 40,112,073
Orient to Chromosome plus
Link Location : (1:40102429-40112073)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000195770
Reports
substitution
cSNPs3
Insertion37
Deletion41
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 40102437 (p.Ile3Ile), 40102458 (p.Gly10Gly),
non-synonymous substitutions 40112063 (p.Pro73Arg),
B6 transcript
(ENSMUST00000195770)
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTETHPTVSKCLWNSRSLRILKHLCL
MSPTCKSQLSPPPGY*
MSMv4 transcript
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTETHPTVSKCLWNSRSLRILKHLCL
MSPTCKSQLSPPRGY*
homology98.68 (76 / 76)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000195770
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTAAGGACAGGGAGAGAAAACATGGGCTTCACACTCCTTTTGGGGAGGT
AAGATGAAGACGGGGGTGGGGGGCAGGGGATGAGATTTGCATTTGTTCTTATTCCTACAT
CATTCTGGAGGTCGGAGGTCTGCGTGGGCCTCAGTGGGCTAGAATGAATTGTAGTCCATA
CAGGGTCCCTGGAGCCACAAGGGCAGCATCCATGTCTTGGGTTTTTGTCCAGCCTCTGGC
TCTCTGGCTCATGGACTGCAGCCCTGCACACACCATCCTCTTCCTCCTTTGGCTGTCTTA
CCACTTTTTCCTGAAGCACCAAACCCGAGTCTGTCTCCGGACTTGGAAATCCTTAACTTA
CATTAGCAGTCACTTTCTCTACATTAAGCAGCATGTTCCCAGCTTCCAAAGACTCAGACA
AAAAGTTAAAAACAAAACCAACCAAACAAACAAACAAACAAAAAGCCAAACAAAGGCCCC
CCTAAAACAAGCCCATCCATTTAATCCTCCTCCTAGTCAAGAAGAGTTCCTTGGGGGTGA
GAGTGGGGATCTTGTGTCCCACTCATTTAAAACCCTCCTTTTCTCTTTAATGGGACCATG
GTTGGGTTTTAAGCAGCATCCAGCAGATGGGGTGAAATCTTGCCTGTGAAACTGTTTACA
ACTTCTTCATGTACAGCCAGCATCACTTTAAAATGTGTTCTTGGCTGGAAGCATGCCATT
CTAGCGACACACACACACACACACACACACACACACACACACTCAAATAAGGAAACTCAG
AGTTTCCTAGGCCACTTCCCCATATGGCAAGGATGTACGCACAAAGCATCATGAGCAGGG
TGCTCCCCGTGAGCAGGGAAAAGGTGTGTCCACCACCACCCAATTAGAGTGAGTGACACA
GGCCAGTTAGGAAACCACAAGCAGGAGCCTATAAATCCCTGAGGGGGCTGCTGGGACATC
ACAGAAGGTGAAAGTCTGGCCCAGCAGCCTTCCCCAGTCAGGCAAGAAGC
1 EXON 1 40,084,792 40,084,819 - - 28
AGCAAGGTACAAGAATACACAGCTGCAG
INTRON 1 - 2 40,084,820 40,102,388 17,569
GTAAGAAGGTGGGAAAGAGGCAGGG..........CTCCTCCCTCTTTTTCCTCCCATAG
2 EXON 2 40,102,389 40,102,537 - 1 149
GCTCCAAGGGTCCTGTGCGCTCAGGAAGTTGGTGCGGACAATGTTCATTTTGCTTGTGTT
AGTAACTGGGGTTTCTGCTTTCACCACTCCAACAGTGGTGCACACAGGAAAGGTTTCTGA
ATCCCCCATTACATCGGAGAAGCCCACAG
INTRON 2 - 3 40,102,538 40,111,954 9,417
GTGAGGAACGAAACGACCACTTCAG..........TTCCTTTTTCTTAACAAACAATTAG
3 EXON 3 40,111,955 40,112,135 1 - 181
AAACGCATCCCACTGTGAGCAAATGTCTGTGGAACTCAAGGTCTTTAAGAATACTGAAGC
ATCTCTGCCTCATGTCTCCTACTTGCAAATCTCAGCTCTCTCCACCACGGGGTTACTAGT
GTGCCCTGACCTGAAAGAATTCATCTCCAGCAACGCTGATGGAAAGATACAGTGGTATAA
G
INTRON 3 - 4 40,112,136 40,115,023 2,888
GTAATGCTTTCAAAATGCATATGCC..........ACTCTCAGATGCATCTCCCCTCTAG
4 EXON 4 40,115,024 40,115,198 - - 175
GGCGCCATACTCTTGGATAAAGGCAATAAGGAATTTCTGAGTGCAGGAGACCCCACACAC
CTATTGATATCCAACACGTCCATGGACGATGCAGGCTATTACAGATGTGTTATGACATTT
ACCTACAATGGCCAGGAATACAACATCACTAGGAATATTGAACTCCGGGTCAAAG
INTRON 4 - 5 40,115,199 40,117,954 2,756
GTAAATACATACCACCGAGGTACCT..........TCTCTTTTCTGTTCTATCTTCTCAG
5 EXON 5 40,117,955 40,118,017 - - 63
GAACAACCACGGAACCCATCCCTGTGATCATTTCTCCCCTGGAGACAATACCAGCATCAT
TGG
INTRON 5 - 6 40,118,018 40,120,908 2,891
GTAAGGATCTACAAGAATTGTGTGG..........GTGTGTTCTATCTTGCTGTCCCCAG
6 EXON 6 40,120,909 40,121,044 - - 136
GGTCAAGACTGATAGTCCCGTGCAAAGTGTTTCTGGGAACTGGTACATCTTCCAACACCA
TTGTGTGGTGGTTGGCTAACAGCACGTTTATCTCGGCTGCTTACCCAAGAGGCCGTGTGA
CCGAGGGGCTACACCA
INTRON 6 - 7 40,121,045 40,123,121 2,077
GTAAGTGGGTGAGGGTCTCTGCTGT..........CTCAATAGAGTGTTTTCTCACCCAG
7 EXON 7 40,123,122 40,123,264 - - 143
CCAGTACTCAGAGAATGATGAAAACTATGTGGAAGTGTCGCTGATTTTTGATCCAGTCAC
AAGGGAGGATCTGCATACAGATTTTAAATGTGTTGCCTCGAATCCACGGAGTTCTCAGTC
ACTCCATACCACAGTCAAAGAAG
INTRON 7 - 8 40,123,265 40,125,040 1,776
GTATGTATGGGGGGTGGGGGGAACT..........CTCACACCCTCTCTTCCCTCTACAG
8 EXON 8 40,125,041 40,125,219 - - 179
TCTCTTCCACGTTCTCCTGGAGCATTGCGCTGGCACCTCTGTCTCTGATCATCTTGGTTG
TGGGGGCAATATGGATGCGCAGACGGTGTAAACGCAGGGCTGGAAAGACATATGGACTGA
CCAAGCTACGGACTGACAACCAGAACTTCCCTTCCAGCCCAAACTAAATAAAGGAAATG
3' upstream sequence
AAATAATATGAGAGTGACCCATGTGGTTTCTTATGGGGGTGGGGTGGGGTAGGGTGGGGT
GGGGTGGCTGTACTGCTTGAAAGGTTCTGTGTTTTGCTGGGTTGTTTAGCAAAGCTCTTC
ATTTGTAGCTGAAGTTGGAATCTTATGCTCTACTCTTCTCTGAAAATCAGTTCTGGGAGA
AAATGTGGAGGGGAGTATGAACAACACTGCCCTTTGTGACCAATGTATGAGAACAAGCCA
TAGCAGCCATAGAGGTCTTGTGGAGCAGCTGTCCTCTGGGTCTGATCCTTACAGTCACGT
CCCTCCTCATCCTTCCCAAGCAACCACGAAAAAGAGCACTGTTAGTCTTGAGTAAGACTG
CTAACCTCCAGAGCACTTTAAAAGCTCATAACTCTTTCATTTAAAGTATGTTAATTTATA
TAATTAGTCTGTGTAGATAGGCTGATGGGAGACACTGGAGGGACAAAGATGGGTAAGACA
TAATGTGCCTTTAGAAAGGGTGATTTTCATTTTGATTCTGGAAGGATGATTAAGACATAC
TGAACCAGAAGAATCAGCAAGGGTTAGTGATTCAAAAATTAGCAATCGCCTTTTTGTAGC
ATATGGCCACCATCACAAGAATCTTTAACTGGTCAAAACTTCAGAGAACAATCAGCTATG
GGGTGCTGCCCGTCCCCAACTGATGCATCTACAACACAACTTCTCCATCTAGGGCTCAAG
GGCCATCTTAGAGCGATTGTGAAGATCAAAGAGCCAGAAGTCCAGGGCATCTGCTGCAAG
ACATGACAAGGAATTGCTCGTACAAAATATCAGCAATGTGGCCTTCTAAACAAGGCCCCA
AACATTACAACATCAGTTGATCAGGGAAATTTCACAAATCCCCATCCCTAGATAAAGGTC
TACAGCTAACTAATGGCTGTGGAGGGAGGGAGAATCAGTCTTCTGCAGGGGTGAGCCTCC
ATTAGCTTACTCAATTTCAAGTGGTCAGCTCTGAAAACAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000195770
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 76 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information