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Target CDS Information

Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Cross Reference
CCDS CCDS38506.1
EMBL AF549497, AK008241, AK008941, ...show all
Fantom 2010015A02, 2210415I10, I830006O04, ...show all
GO GO:0001726, GO:0005509, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name S100a6-002
OTTP OTTMUSP00000070488
OTTT OTTMUST00000132088
PDB 4P2Y
protein_id AAA37358.1, AAH03832.1, AAH10774.1, ...show all
UCSC uc008qdb.1
UniParc UPI0000001732
Uniprot/SPTREMBL Q545I9
Uniprot/SWISSPROT P14069
Vega_transcript OTTMUST00000132088, S100a6-002
Vega_translation 187854, OTTMUSP00000070488
Definition protein_id:ENSMUSP00000143111
translation:
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK

Chromosome 3
Length
Position(start - end)
554
90,613,767 - 90,614,322
Orient to Chromosome plus
Link Location : (3:90613767-90614322)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000198128
Reports
substitution
cSNPs1
Insertion2
Deletion7
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 90614286 (p.Gly78Gly),
non-synonymous substitutions
B6 transcript
(ENSMUST00000198128)
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK*
MSMv4 transcript
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK*
homology100.00 (90 / 90)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000198128
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGCTTGGCTCTACTATGTGCACATTCATGCATAAGCTGCTCTAAGGATGA
AAATCCAGGCAGTGAGTGGGAGGAGGCGAGTGATGTTGCTAGAAATTTATGGTTGGTGGG
GGATGCTGTTTAAAATCGTTTAGACTGTGTTCTTTCCCCATGCCCCCTTTGATACAAGGC
TCAAAATTCTACCTTTTGGGATCAACGTCTTTAGCTATATATCAAGATTTAGACCAGTGG
TTCTCAACCTGTGGGTTGAGACCCCTTTCACAGGAATTGCCTAAGACCATCTGAAAACAC
AGATATACACATTAAGATTCATAACAGTAGCAAAATTATAGCTATGAAGTAGAAACGAGA
ATAACTTTATGATTGGGGGACCACCACAACTTGAAGAACAGTATTAAAGGGCCGCAGCAT
TAGACAGGTTGAGTGAGAACCATTTCTTAGAGGATGTGGTAGACAGACTGCTTCCCCTCC
CTCACTTGGGGACCTTGCCACTAGAGGGCAACAGCATCAGTGTGGTTCCCAGTCCCCCTC
ACACTGATGCTAACTTTAAGGACACTGCTCTCGGGCTGGCAGAAGGTTCAGCACACAAGC
CAGAGTTTCGAGTCACGTGCCAGAAGGGAAAACTAAACACGGAATTAGAGAAAACTTGAT
GCCTCTGGCTTGCACTGGTCTCCTTTGGGCCCCTTAGGGCCCGCTAAACTCCCTCATTCC
GCTCCTAATCCTGGACAGTCCAGGCAACAGGGGCGTGGAAAGTTGAGGGGGCTGGGATGT
TCGTTTGCCTTGCCTCAGGCGCTGGGTGGGGTCGGGGCGTGCCAGCACTCCCTGGGCGGA
CCTCACGGATGCTGGCCACTATAAGGCCGGCCAGACTGCGACACATTCCATCCCCTCGAC
CACTCCTTTGGCGCTTCGCTGTCGACAGTGCGGTGAGCTCTCGCTGGGGGGTCCCTCTAG
GGTCTTTCTGCTCCTGGGCAAGGGGTTAAGCCACTTCCTTCCCCCGTCAG
1 EXON 1 90,613,305 90,613,382 - - 78
CCTCTGCTGGCTCAGTGGGTGGAATGCATTGGGATCCAAGTTTTCGGAGCCCAGGGAGGC
AGGGAGAGCCATGATTAG
INTRON 1 - 2 90,613,383 90,613,742 360
GTGGGTTGTATCAGGCAAACCCAGA..........ACTGACTAGCCCCTCTGTCAAACAG
2 EXON 2 90,613,743 90,613,904 - 0 162
CTTCTTCTAGCCCAGTGATCAGTCATGGCATGCCCTCTGGATCAGGCCATTGGCCTTCTC
GTGGCCATCTTCCACAAGTACTCTGGCAAGGAAGGTGACAAGCACACCCTGAGCAAGAAG
GAGCTGAAGGAGTTGATCCAGAAGGAGCTCACCATTGGCTCC
INTRON 2 - 3 90,613,905 90,614,190 286
GTGAGTAGCCCCTGTCCCGGTTCCC..........GGACTTCTCCTTCTTAATGTATTAG
3 EXON 3 90,614,191 90,614,414 0 - 224
AAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAG
GAAGTAAACTTCCAGGAGTATGTCGCCTTCCTGGGAGCCTTGGCTTTGATCTACAATGAA
GCTCTGAAATAAAATGGGACCGTTGAGATGACTTCTGGGGGCCTCTCTCGGTCAAATCCA
GTGGTGGGTAGTTATACAATAAATATTTCGTTTTTGTTATGTCT
3' upstream sequence
ACTCATGTGTTCTGGCTTCCCACTGATTTCCAGTTGCTTCCTGCCTTGCTGCTGGACCCA
CCATCCAGTGGTCTTAGTCACAGTTAAACTCTGGGAGTAGTAGCTCATTGACCCACCAGG
CCAGGTCTGCCAGCTGACCAGGAATCTTTATGGGTATTAGAAGAGGAGGCCCCTCTAGGC
AAAGCCACTTTAAACAAAGGCTCAATCAAGTGACCTTCAGGAGAAAGTGGCCTTTAGAAG
CAGGTCTGCAGTAGTCCCAGCAGTCTCCTGGCAGACACACTTTGGTCTGGGTGTGGTGAA
ACAGGGAGTACTAGGTGGGCCCTGACGTTGGGCAATCCACCTTTTCACTGTGTGTTTGTG
TGTTATATGAGGGAGGCGTGGGGAGAGGCACATCTGAGGTGAGCAGGGAGGGACACAGGA
TGACTGAGTTTTCTGTAGCTGCCTGTGTTCCAGTTGGAGGTGGAGGAGACTGTAGGAGAC
GGTCCCTAGTGTCAGGTATGGGGTCCTTTTTGTTGAGCTAAGGAGCTGGCAGCTCCACAC
ACATGTGACTCACGAGGTGCTCGCAAACAGGGCAGGGCTGGGGTCCCGAGACATGCCAAA
TGCGGCATCAGGCCTTTTTGTCAATATTGACCCAGCCTGTCCCTGCAGAATGACTCATGG
GGCTACTTCCCTGGAACCTAGTTGAACCCTCAATCCCTATCAGAGTAGATGGCCAACGGA
GTAACTGTCTATTGTGTACAGTTAAATCATAGGTGTGGGGGAAGCTGTGTGTGATGTGTC
TGGGTGTCATGGAGACAGCATTTGTTGCTATTCCTCCAGGGAAGGCCTAACCCAAGTTGG
ACAACATCCTGGCCAAGCCCCGAAGGGCAAAGATCTGGACTTCATGTGGAGACCATAGCT
GTTTTCACTTCTTACTACCCACCCCTTCTCCAATCCACTTAAGACGTTAAATGGTCTTCC
CATGCTCTGGGTGGGGCAAGTAAACAGCAACAGCTGTATT..........

Sequence Detail Report

Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000198128
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 90 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information