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Target CDS Information

Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Cross Reference
CCDS CCDS38506.1
EMBL AF549497, AK008241, AK008941, ...show all
Fantom 2010015A02, 2210415I10, I830006O04, ...show all
GO GO:0001726, GO:0005509, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name S100a6-004
OTTP OTTMUSP00000070489
OTTT OTTMUST00000132089
PDB 4P2Y
protein_id AAA37358.1, AAH03832.1, AAH10774.1, ...show all
UCSC uc008qdb.1
UniParc UPI0000001732
Uniprot/SPTREMBL Q545I9
Uniprot/SWISSPROT P14069
Vega_transcript OTTMUST00000132089, S100a6-004
Vega_translation 187855, OTTMUSP00000070489
Definition protein_id:ENSMUSP00000143720
translation:
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK

Chromosome 3
Length
Position(start - end)
554
90,613,767 - 90,614,322
Orient to Chromosome plus
Link Location : (3:90613767-90614322)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000200289
Reports
substitution
cSNPs1
Insertion5
Deletion10
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 90614286 (p.Gly78Gly),
non-synonymous substitutions
B6 transcript
(ENSMUST00000200289)
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK*
MSMv4 transcript
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL
DRNKDQEVNFQEYVAFLGALALIYNEALK*
homology100.00 (90 / 90)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000200289
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GACTGCTTCCCCTCCCTCACTTGGGGACCTTGCCACTAGAGGGCAACAGC
ATCAGTGTGGTTCCCAGTCCCCCTCACACTGATGCTAACTTTAAGGACACTGCTCTCGGG
CTGGCAGAAGGTTCAGCACACAAGCCAGAGTTTCGAGTCACGTGCCAGAAGGGAAAACTA
AACACGGAATTAGAGAAAACTTGATGCCTCTGGCTTGCACTGGTCTCCTTTGGGCCCCTT
AGGGCCCGCTAAACTCCCTCATTCCGCTCCTAATCCTGGACAGTCCAGGCAACAGGGGCG
TGGAAAGTTGAGGGGGCTGGGATGTTCGTTTGCCTTGCCTCAGGCGCTGGGTGGGGTCGG
GGCGTGCCAGCACTCCCTGGGCGGACCTCACGGATGCTGGCCACTATAAGGCCGGCCAGA
CTGCGACACATTCCATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACAGTGCGGTG
AGCTCTCGCTGGGGGGTCCCTCTAGGGTCTTTCTGCTCCTGGGCAAGGGGTTAAGCCACT
TCCTTCCCCCGTCAGCCTCTGCTGGCTCAGTGGGTGGAATGCATTGGGATCCAAGTTTTC
GGAGCCCAGGGAGGCAGGGAGAGCCATGATTAGGTGGGTTGTATCAGGCAAACCCAGAGG
CTAATGCATCCCTATGGGGCGGCAACCTGAGTCTGCTCTTCTGGGGTGCAGGAGGGTTTG
CCCTGGGTGTGTCATCGTCCCAGTGTGTGGCTATGTCAGGAGGTGCCCAGGGGCACTCTC
CATTCTCTTCCTTGCTCAGTCATATGCCCTAGTTCTCTTGGAAGCCCTGGAGGACAGTGC
TCACAGATCCCAAAGCCCCTTCCATTCTTATATCCCTCACCTAAGTTGTCCCGGCTGCCA
CCTGTGTTGGCTTGAGACTGACTGCCTCAGGCAGGGGGATGGTGAGAGAACTCTCTGCTA
TCAGCAGCACTGACTAGCCCCTCTGTCAAACAGCTTCTTCTAGCCCAGTG
1 EXON 1 90,613,760 90,613,904 - 0 145
ATCAGTCATGGCATGCCCTCTGGATCAGGCCATTGGCCTTCTCGTGGCCATCTTCCACAA
GTACTCTGGCAAGGAAGGTGACAAGCACACCCTGAGCAAGAAGGAGCTGAAGGAGTTGAT
CCAGAAGGAGCTCACCATTGGCTCC
INTRON 1 - 2 90,613,905 90,614,190 286
GTGAGTAGCCCCTGTCCCGGTTCCC..........GGACTTCTCCTTCTTAATGTATTAG
2 EXON 2 90,614,191 90,614,373 0 - 183
AAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAG
GAAGTAAACTTCCAGGAGTATGTCGCCTTCCTGGGAGCCTTGGCTTTGATCTACAATGAA
GCTCTGAAATAAAATGGGACCGTTGAGATGACTTCTGGGGGCCTCTCTCGGTCAAATCCA
GTG
INTRON 2 - 3 90,614,374 90,623,726 9,353
GTGGGTAGTTATACAATAAATATTT..........TGTGTTGCTTGCCCTCTCTTCCCAG
3 EXON 3 90,623,727 90,624,181 - - 455
GTTTGACACATTTTCCCTGATTGATGCTATCTTTTTCACCTTATTGGCATACCCACATCC
AACCAGTCAGGCCCAGCTGGCACCCTGGCACTTCTATGAATCCTCGATTCCAGAGCTGCT
GTAGGAGCCCACCAGGGAAGAACAGAAGGAAGACTTCAAAGCCTGCTCCCTGGCCCTGGC
CTGCAGCTGTGCTCCAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAAGACTTAAGTG
TCTGGCTTTTAGCTGGCTTGCTCATTGAAGAAGGAAGAGTGCCTTCCATAATCACCAGGG
ACACAGAGAGGAAGGTCCTTGGGTCTTAGGCAGGAAGCTTGCTGGATTCCGGGACTTGAG
CAGCTGCAGGTGGGGGACCTGTGCGCATCTCATCCTTCAAGGCTCCCCTTGCCTGGTGGG
CTATGGAAGGGAATTTTCTTCTGCAACTGTTTGTA
3' upstream sequence
CTCTCTGAGACTTGGCTTCTAAGCCTGGAAGCCCCAAACGTTCAGATCTTGACACTTGAG
AGACCTGTGACTCCAGCTTTGGACACCTGTTGTTCCAGAGACCTTCCACTCCTGCCTTCT
GGAGACAGAAGACTTGCTGCTTCTGTTATTCCCACTGCTGACCTGCAGGGTTGCTCTGCA
AGGCTCTGCTCTTTATTGGCACTCGAAGGACTCCAGCCTTTGAGGTCAGAGTTAGCATGG
ACACCTGTTTCAACTTTTATCTCATTTAAAGGGAACGAACAATAAAGTACCCCCAGTTTG
TGCTCTTCACTGTATGCCTACTTCATTCTTTGAGAAAGGTGGGACAAGAACCTGGTTGGA
GACAGACGGTAGACTCCGTCGACTGCTTCAGAAGGGCTGTTGTAAAGGGTAGTGGCTAGA
ACCTAGATTTTGGAATAGGCAGAATCAAGTTTAAACCTTGTTGTGAGCCTGGTGTGGTGC
TCATGCCTGAAATCCAGCACTCAAAGGTCAAGGTAGGAGGGCCAGGAGTTGTAGACCAGG
ATGGTCTATGTGGTGAGTTCCAGGCAAGACAGGGCTACTGTGAGACCCCGTCTCAACCAA
ACTAAACCAAACCTACCATACCACATGAAAACAAAAGAAAGCACTCCCCAACCAAACCCA
CAAAGTAAAACAACCCCTGATTCAAACCAAACCATTATCAAACCCTCACTTTGCCTTAGG
TGGAAAAAAGTCCTGAAGCCTCAATTTGATCCTCTTTAAATTGCGATACACTCAGCTTCC
TGTTAGTGATGTTTTGAGAATGAAAGGAAACAATGCATTTACAATCCTTAGCATTACAAC
ACAGTAAATGATAACTATTATTAGCATATTAAAATGTTATTACTTAGTATATAAGTACTT
ATTAGGTAGTAGTTAGAGTAGGTTCAAAGATAATAGTGATGTCATTCCACAATTAGATCC
TGGTGGTGGGCAGAGGAACCACTATGGATCTGGTGAGTGA..........

Sequence Detail Report

Gene Symbol (Gene ID) S100a6 (ENSMUSG00000001025)
Transcript ID ENSMUST00000200289
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 90 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information