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Target CDS Information

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Cross Reference
MGI_trans_name Nck2-008
OTTP OTTMUSP00000072900
OTTT OTTMUST00000138737
UniParc UPI0006454801
Vega_transcript Nck2-008, OTTMUST00000138737
Vega_translation 179154, OTTMUSP00000072900
Definition protein_id:ENSMUSP00000144224
translation:
MTEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
SLKKGSLVKNLKDTLGLGKTRRKPSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
AYVAEREDELSLVKGSRVTVME

Chromosome 1
Length
Position(start - end)
20,493
43,533,568 - 43,554,062
Orient to Chromosome plus
Link Location : (1:43533568-43554062)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000202540
Reports
substitution
cSNPs2
Insertion28
Deletion27
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 43533699 (p.Ala44Ala), 43553958 (p.Arg108Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000202540)
MTEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
SLKKGSLVKNLKDTLGLGKTRRKPSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
AYVAEREDELSLVKGSRVTVME
MSMv4 transcript
MTEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
SLKKGSLVKNLKDTLGLGKTRRKPSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
AYVAEREDELSLVKGSRVTVME
homology100.00 (142 / 142)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000202540
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACCTGCACTTGGTGCCTGCTGCATCCCTTAGCAACTGCTGCACATTTCTG
GCCTCTCCAACACCCTGTTCTGTGGCTTAGCAGGAAGCTGTGTTTTTATAAGCCTTATGC
TTTCAGCATGAACTGAAATAAACGCATCCAAGTCCTCTCATAACGACTGTTGATGCAGAA
GGAAATTCAGTAGAGAGCGTTGGTTGGCTGGATATCAACTGATTTACATGATGATCTGCT
CCTATTTAAAATCATTTTGGAAATTATATAATTCGGCAGCAGACCTGGTATTTAAATGGA
ATCCCCTCTGAACCTCTTTTTTATTACTATTGTTCTTGTCCTTGACTTTAAAGGAGATGC
TCACTTTGATGCGTTTCGGGTCTAATCTGATAGAGAAATCAGATGTGTGTGCTACAAGCT
ATGGACTGGGGGGAGGGGGGGGGGTCCTCTGACAGCAGGTAGTTAGCTATCTGTCTCCAG
CTTTGAGAAGAACTTTGAGTAAACTCTACCCTCTTGGATATTATGTGCATTATGTATACA
CTTTACAAGAATTTTCATTTTCCCTAATGATTTTTTAATCTAATGTGGTAATTCATAAGT
GAGAAGATACATATTATTTTTATGTGCCTGAATATGGTAGAATGTGTCATTCATGCCTCC
ATGGGTCAGGTGCATAGGTTTCCTGTGACTCTGAACTCATGAGGTAAAATCAGGGGAACT
CTGTCAAGAGGAGAGAGGGGTTTGGGTCACGTATCCTGTCATTACTCCTCAATAACTGAA
GGGTGTGTCCAGTCAGTAGAGGGGCTGACTATGACTTTTCTGCTGCAAGAACACTTGTGC
ATTTTCTACCTGAGAAGGGTACAGTTGCTGAGGTAGGTGGTACCTCTGTGTATTGTTTTC
TTTCCTATCTAGTACATCCCAGATTGACGTCATCGGATTTCTACTGTTTGTTTTAATAAG
AACTAGTTAGGAGACAGCAAGGCAGACTGTTCAGGGGTTCCTACAACAGA
1 EXON 1 43,532,405 43,532,538 - - 134
GTTCTACAGTCAGGAAGACAGTTCAGCTCCCCGTGTGGAGATAAGTGGGAGTTTACAGCC
AGAGGGGAGGAGGAATATGCTGTGGAGGGTCCTGAATGAGCTCATCTAACAGGAAGCTTG
CTGAAGGAGACCAG
INTRON 1 - 2 43,532,539 43,533,551 1,013
GTGACCAACCGTCACATGCAGCATG..........GCATCTTTAAATGTTTTGCTGGCAG
2 EXON 2 43,533,552 43,533,793 - 1 242
AAGGACTCCATGAAAGATGACAGAAGAAGTCATTGTCATAGCCAAGTGGGACTACACTGC
CCAGCAGGACCAGGAGCTCGACATCAGGAAGAACGAGCGGTTGTGGCTGCTAGATGACTC
CAAGACGTGGTGGCGGGTGAGGAATGCGGCCAACAGGACAGGCTACGTGCCTTCCAACTA
TGTGGAGCGTAAGAACAGCCTGAAGAAGGGCTCCCTGGTGAAGAACCTCAAGGACACACT
AG
INTRON 2 - 3 43,533,794 43,553,860 20,067
GTGAGTGTCCATACCCACAGGAACA..........TGAACCATTTGCCATGTCTTCACAG
3 EXON 3 43,553,861 43,554,062 1 - 202
GCCTCGGAAAGACGCGCAGGAAGCCAAGCGCTCGGGATGCTTCCCCAACGCCAAGCACTG
ATGCGGAGTACCCAGCCAATGGCAGCGGTGCTGACCGTATCTATGACCTCAACATCCCAG
CCTTTGTCAAGTTCGCCTACGTAGCAGAACGAGAGGATGAGCTGTCCCTGGTGAAGGGCT
CCCGTGTCACAGTTATGGAGAA
3' upstream sequence
ATGCAGTGATGGCTGGTGGCGTGGCAGCTTCAATGGGCAGATCGGCTGGTTCCCCTCCAA
CTACGTTCTGGAGGAAGCAGACGAAGCTGCGGCTGAGGCCCCCAGCTTCCTGAGCCTACG
TCGGGGCACTGCACTGAGCAATGGGCAGGGTGCACGGGTGCTGCACGTGGTGCAGACGCT
GTACCCCTTCAGCTCGGTCACTGAGGAGGAGCTTAGTTTCGAGAAGGGGGAGACCATGGA
GGTGATTGAGAAGCCGGAGAATGACCCTGAATGGTGGAAATGCAAAAATGCCCGAGGCCA
AGTGGGCCTGGTCCCCAAAAACTACGTGGTTGTTCTCAGTGATGGGCCTGCACTGCACCC
CGCGCACACCCCCCAGATCAGCTACACCGGGCCTTCAGCCAGCGGGCGCTTTGCTGGTCG
GGAGTGGTACTATGGCAACGTGACACGGCACCAGGCCGAGTGTGCGCTCAATGAGCGGGG
CGTCGAGGGCGACTTCCTCATTAGGGACAGCGAGTCCTCGGTAAGTGCCCAGCAGCTCCT
GTGCTGGAGCCACATTGCCAGAAGGAAGCTAAACGCGCAGTTCCCTGACCTGTGAGGTCA
GGGATTCCAGCCAGCCCTGGTCTGCGGATATTCAATAATGTTACAGGTCATTTGCCTCAT
TCTCCATTGTTAAATGTCTTACCAAGTCATGTAAGTTAGGCTTAATCCTGGGCATAACAA
AAAGCCTTATTTCTAGGGTTCTGATCTACCATGGTTCTAGGTGTCCACTGGAGTTCTCGG
AACCGTCCTCAGAAAGAACCACATTGTGGAAGGGCCGTGACTGGTAACCATTCCCATGGC
ATGTTCACTGACTATACTTGAAATAGCAAAATGGTATTTGAGGGCACGTACTAAACTAGC
CAAATACTATGTTGACATAGAGTCAGCTGCTCCCAATTTAGCTAAATCTAGGTTGGGTAG
ACTGTGAAGTCCCTGTTGCTACTCCTTTTCCTGGTTGTGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000202540
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 142 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information