MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Ptp4a1 (ENSMUSG00000026064)

Cross Reference

MGI_trans_name	Ptp4a1-006
OTTP	OTTMUSP00000072560
OTTT	OTTMUST00000137910
UniParc	UPI000268B576
Vega_transcript	OTTMUST00000137910, Ptp4a1-006
Vega_translation	178871, OTTMUSP00000072560

Definition

protein_id:ENSMUSP00000143884
translation:

MIRPQSSMSRHIPQFCGVLGHTFMEFLKGSGDYCQAQHDLYADK

Chromosome

Length
Position(start - end)

3,042
30,946,544 - 30,949,587

Orient to Chromosome

minus

Link

Location : (1:30946544-30949587)
/

Detail Map

name	Ptp4a1 (ENSMUSG00000026064)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Ptp4a1 note : protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096]

name	Ptp4a1 (ENSMUSG00000026064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027232

name	Ptp4a1 (ENSMUSG00000026064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000076587

name	Ptp4a1 (ENSMUSG00000026064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000202889

name	Ptp4a1 (ENSMUSG00000026064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14858.1 Uniprot/SWISSPROT:Q63739 RefSeq_peptide:NP_035330 RefSeq_mRNA:NM_011200.2 RefSeq_mRNA_predicted:XM_006495798.2 RefSeq_mRNA_predicted:XM_006495799.1 RefSeq_peptide_predicted:XP_006495861.1 RefSeq_peptide_predicted:XP_006495862.1 RefSeq_peptide_predicted:XP_006544159.1 Vega_transcript:OTTMUST00000050557 Vega_transcript:Ptp4a1-001 Uniprot/SPTREMBL:B9EKL6 UCSC:uc007anh.1 UCSC:uc007ani.1 Fantom:C130021B01 Fantom:G370079M23 Fantom:I830008L20 Fantom:I830031H07 EMBL:AF064943 EMBL:AK081491 EMBL:AK148288 EMBL:AK150506 EMBL:AK151533 EMBL:BC055039 EMBL:BC086787 EMBL:BC094447 EMBL:BC150972 EMBL:BC150981 EMBL:CH466536 EMBL:CH466669 EMBL:U84411 GO:GO:0004725 GO:GO:0004727 GO:GO:0005634 GO:GO:0005737 GO:GO:0005737 GO:GO:0005768 GO:GO:0005769 GO:GO:0005783 GO:GO:0005819 GO:GO:0005886 GO:GO:0007049 GO:GO:0007275 GO:GO:0008138 GO:GO:0009898 GO:GO:0009898 GO:GO:0030335 GO:GO:0035335 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Ptp4a1-001 Vega_translation:178869 Vega_translation:OTTMUSP00000023621 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0016791 goslim_goa:GO:0043226 protein_id:AAB58913.1 protein_id:AAH55039.1 protein_id:AAH86787.1 protein_id:AAH94447.1 protein_id:AAI50973.1 protein_id:AAI50982.1 protein_id:BAC38233.1 protein_id:BAE28460.1 protein_id:BAE29619.1 protein_id:BAE30480.1 protein_id:EDL14422.1 protein_id:EDL20880.1 OTTP:OTTMUSP00000023621 OTTT:OTTMUST00000050557 UniParc:UPI00000227B8
definition	note : transcript_id=ENSMUST00000027232 protein_id : ENSMUSP00000027232 translation : MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ

name	Ptp4a1 (ENSMUSG00000026064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14858.1 Uniprot/SWISSPROT:Q63739 RefSeq_peptide_predicted:XP_006544159.1 Vega_transcript:OTTMUST00000050561 Vega_transcript:Ptp4a1-005 Uniprot/SPTREMBL:B9EKL6 UCSC:uc007anh.1 UCSC:uc007ani.1 Fantom:C130021B01 Fantom:G370079M23 Fantom:I830008L20 Fantom:I830031H07 EMBL:AF064943 EMBL:AK081491 EMBL:AK148288 EMBL:AK150506 EMBL:AK151533 EMBL:BC055039 EMBL:BC086787 EMBL:BC094447 EMBL:BC150972 EMBL:BC150981 EMBL:CH466536 EMBL:CH466669 EMBL:U84411 GO:GO:0004727 GO:GO:0005737 GO:GO:0005768 GO:GO:0005769 GO:GO:0005783 GO:GO:0005819 GO:GO:0005886 GO:GO:0007049 GO:GO:0007275 GO:GO:0008138 GO:GO:0009898 GO:GO:0030335 GO:GO:0035335 GO:GO:0070062 MGI_trans_name:Ptp4a1-005 Vega_translation:178870 Vega_translation:OTTMUSP00000023622 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0016791 goslim_goa:GO:0043226 protein_id:AAB58913.1 protein_id:AAH55039.1 protein_id:AAH86787.1 protein_id:AAH94447.1 protein_id:AAI50973.1 protein_id:AAI50982.1 protein_id:BAC38233.1 protein_id:BAE28460.1 protein_id:BAE29619.1 protein_id:BAE30480.1 protein_id:EDL14422.1 protein_id:EDL20880.1 OTTP:OTTMUSP00000023622 OTTT:OTTMUST00000050561 UniParc:UPI00000227B8
definition	note : transcript_id=ENSMUST00000076587 protein_id : ENSMUSP00000110861 translation : MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ

name	Ptp4a1 (ENSMUSG00000026064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000137910 Vega_transcript:Ptp4a1-006 MGI_trans_name:Ptp4a1-006 Vega_translation:178871 Vega_translation:OTTMUSP00000072560 OTTP:OTTMUSP00000072560 OTTT:OTTMUST00000137910 UniParc:UPI000268B576
definition	note : transcript_id=ENSMUST00000202889 protein_id : ENSMUSP00000143884 translation : MIRPQSSMSRHIPQFCGVLGHTFMEFLKGSGDYCQAQHDLYADK

name
type	misc_feature
link
xref
definition	note : contig AC153137.4 74143..201668(1)

name	Ptp4a1 (ENSMUSG00000026064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050559 Vega_transcript:OTTMUST00000050559 MGI_trans_name:Ptp4a1-003 OTTT:OTTMUST00000050559
definition	note : retained_intron note : transcript_id=ENSMUST00000153681

name	Ptp4a1 (ENSMUSG00000026064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050558 Vega_transcript:OTTMUST00000050558 MGI_trans_name:Ptp4a1-002 OTTT:OTTMUST00000050558
definition	note : processed_transcript note : transcript_id=ENSMUST00000124445

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ptp4a1 (ENSMUSG00000026064)
Transcript ID	ENSMUST00000202889

Reports
substitution
cSNPs	0
Insertion	4
Deletion	12
SNPs	+1kb 30950117(c.-530G>C), 30950261(c.-674G>A), 30950349(c.-762A>C), 30950416(c.-829A>G), 30950566(c.-979C>T), 30950598(c.-1011A>T), 30950763(c.-1176C>T), 30950902(c.-1315T>A), 30951106(c.-1519T>C), 30951326(c.-1739A>C), 30951531(c.-1944G>T), 30951629(c.-2042C>A), 30951764(c.-2177A>C), 30951818(c.-2231T>C), 30951944(c.-2357A>T), 30951966(c.-2379A>G), 30952043(c.-2456A>T), 30952109(c.-2522G>A), 30952148(c.-2561C>T), 30952197(c.-2610A>G), 30952410(c.-2823C>T), 30952496(c.-2909A>C), 30952497(c.-2910C>T), 30952697(c.-3110A>G), 30952856(c.-3269A>T), 30953065(c.-3478C>T), 30953176(c.-3589C>T), 30953306(c.-3719C>G), 30953458(c.-3871G>C), 30953482(c.-3895A>G), 30953568(c.-3981G>A), 30953644(c.-4057T>A), 30953722(c.-4135G>T), 30953747(c.-4160C>G), 30953784(c.-4197G>A), 30953787(c.-4200C>G), 30953796(c.-4209T>G), 30953854(c.-4267G>A), 30953862(c.-4275G>T), 30953905(c.-4318G>T), 30954279(c.-4692C>T), 30954287(c.-4700G>A), 30954290(c.-4703G>T), 30954396(c.-4809C>T), 30954416(c.-4829C>A), 30954435(c.-4848C>G), 30954478(c.-4891T>C), 30954500(c.-4913T>C), 30954522(c.-4935C>T), 30954565(c.-4978G>A), 5'UTR CDS 3'UTR INTRON 30947293(c.40-654G>A), 30947398(c.40-759T>A), 30947512(c.40-873T>C), 30947805(c.40-1166C>G), 30947840(c.40-1201C>T), 30947950(c.40-1311C>A), 30947951(c.40-1312T>A), 30948651(c.39+898G>A), 30948986(c.39+563C>G), 30949000(c.39+549A>G), 30949079(c.39+470G>A), 30949166(c.39+383G>C), 30949169(c.39+380T>C), 30949203(c.39+346T>G), -1kb 30941545(c.4999A>G), 30943450(c.3094C>T), 30943943(c.2601A>G), 30944045(c.2499T>A), 30944294(c.2250C>T), 30944405(c.2139A>C), 30944413(c.2131C>T), 30944476(c.2068G>A), 30944871(c.1673A>G), 30944977(c.1567C>T), 30945219(c.1325T>C), 30945281(c.1263G>A), 30945289(c.1255C>A), 30945789(c.755T>C), 30945927(c.*617A>G),
Insertions	+1kb 5'UTR CDS 3'UTR INTRON 30949216 (c.39+332_39+333insGG), -1kb 30944307 (c.2236_2237insC), 30944504 (c.2039dupT), 30944743 (c.1800_*1801insG),
Deletions	+1kb 30950239 (c.-656_-653delAAAA), 30950455 (c.-869delA), 30951199 (c.-1616_-1613delTTAC), 30952583 (c.-3005_-2997delCCAAAAAAA), 30954083 (c.-4501_-4497delATAAT), 5'UTR CDS 3'UTR INTRON 30947132 (c.40-498_40-494delTGTTT), 30948055 (c.40-1419_40-1417delTGT), 30948297 (c.39+1250_39+1251delAT), 30948942 (c.39+605_39+606delTA), -1kb 30943573 (c.2970delT), 30944901 (c.1639_1642delTACA), 30946225 (c.312_*318delTTTTTTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000202889)	MIRPQSSMSRHIPQFCGVLGHTFMEFLKGSGDYCQAQHDLYADK*
MSMv4 transcript	MIRPQSSMSRHIPQFCGVLGHTFMEFLKGSGDYCQAQHDLYADK*
homology	100.00 (45 / 45)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ptp4a1 (ENSMUSG00000026064)
Transcript ID	ENSMUST00000202889

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TAGATTAAAAGGACACTGGAATAGGACTGAAGATCAACAAAAGGGGAAAG CTTAGCTTTTGACGCAAAAACTTACATCAGCCCTTGATAAAGCCGAAGATTCTTAATTTA AAAAGAAAAAGAAAAAAAAAAAGCTTCCCCTTAGCAAAAGCTAACCTTTCATTATCTGAG AGTGAGCAGCAGTACAAAGGATGCATGTGATTTCGAAATGCCACAAACGAGCCAACTGCA GTTGCCAGCATCAGCAGTTTAGGGGTGTAACCTAAAAAGAAAGGGGGTGGGGGGAGAAGA AGAAAGGCTAGGAAGCAACTAGGCTTCACGTGCCTCAAAAGAAAAAAAAAAAAAAAAATA GGGACATTTCCTGGGTTCCACCGGCTAATCTCTGCGGAGAGCCTTCCCACACGTGGAAGT GCCCGTGGTGACGAGAATCCCTAGTCCCAGACTAGGGCCGGGCTCTGGAGCGGTGAGTCA CCCGCCCAGCGGTCATGCGACATCAATATGGAGTGATGACGGAGATCCCCGGGCGCAAGG GCCAAGGTAAACCGTTGGCCAGCGCGACAGAGCTATGGCCTCGGGCTACAGGGTTCCGCC CGCCGGAGAGGCGTTCCAAGTTGAGGCGAACTCGCGGCTCTAGCGACCGGAGCGTTTGGT GGCGAGGACCAGCCAGCACACCGCGCCATTCATCAACCGGTTCGCACCGGTGGCGGCTGC CCCGAGTGACGTCTGCGTCCCGGGCCCCGCCTCGAGCCGCAGGCGTCCCGCGCCGTGATT GGCTGCCGCCTGTGCGCACGTCGCGCCGGCTATAAAGGGGCGGACTTGTGACGCAGGGGC GCCTGGGCGCGCGCATTGGCTCTGGGCTGCGGCCGGCTCGGCGACGCTCCTCGGGCAGCT CACTGCATGGTCGTCTGGTGCCCCCGCCGCCTGCATCCCCGCCGCCGCCCCGCGACGCCC ACCGCCGCCTGCCCTGCCGCCGCCGCCTGCGCCGCCTCGGGACCGGCTGT
1	EXON 1	30,949,549	30,949,587	-	0	39	ATGATTAGGCCACAATCTTCAATGAGTAGACATATTCCT
	INTRON 1 - 2	30,946,640	30,949,548			2,909	GTGAGTACCGCGGGCCCGGCCTTTG..........CTTGCTTTCCTTTTCTTCTAAACAG
2	EXON 2	30,946,544	30,946,639	0	-	96	CAGTTCTGTGGTGTTCTCGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGATTAC TGCCAGGCACAGCACGACCTCTATGCAGACAAGTGA
	3' upstream sequence						ACTGTAGAAATTCATTACTACTCCACCAAGAAACCCCCATAAGAGTGGATAACCTGGACA CAGGCGTGTTGAATTGAAATCTGCAGAGCATTTGACAAGAGCTCAGACCTGGATGGGGTA AACCTCAGTGCACTTCCTTTGTATTGCCTCAGTATTACTGGATTGAAGACTCACTGCTTC TTGTTAGGAGGTTCATTTCATTGCCCGTTTCTCCCAATTCATACTCAAGCACTGAGAATT TCAAGTGGAGTATATTGAATATTGAAGTAGACTTCAGGTTGTTTTTTGGTTTTGTTTTGG TTTTTTTTTTTTTTTTTTCTGTTTTGGTTTTAAATCATTTCTGTATTCAATTTTTTAATT CTTTCATAACCCTATTGGGTGTTTTTTTAAACTAAATTAACATGGCTCGAATGAACCGCC CTGCTCCTGTGGAAGTCACATACAAGAACATGCGATTTCTTATTACACACAATCCAACCA ATGCGACCTTAAACAAATTTATAGAGGTAAGATACAATTTTTAATGTCCTAATTGATGAC AGTTAATAGTGGGTCTGCTTGAAAGTGTCTAGCTCTCGCTCCCAGAGAAGAAATATTGGA ACGGTAGAAGTGTGCTGCACTTGAGAACTATGTAGCCCTAAGTTTGCTTAGTTAAATTTA CAAGGCACAGAGTTTTTCCTATTTCTTCTTAGCCTAGTGTTGTAATCTTCCATTAGTTGG TGTCTGATTTTATTTGTGCTTTAAGTCTAGTTTTCAGCTGCTAATTCTGCTATTTTCTGA TGGCAGATAATGAGGCCTCCCAACTTGCTTGTACTAGGAATTGGAATTTAATGCCAAATA ATTTAATTGAGCTTACATTTATAAAGTATAAAAATCTACATATGCTTAGATAGCAAATAG AGAAATATTTAAATGTTACATAATTTTTTAAATTTTGAATTACAATGTTTCTAATGTCAG CAGGGTTGAGTTATAATTACTTAATGTGTCCTTAGGCCTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Ptp4a1 (ENSMUSG00000026064)
Transcript ID	ENSMUST00000202889

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 45 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information