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Target CDS Information

Gene Symbol (Gene ID) Sema4f (ENSMUSG00000000627)
Cross Reference
MGI_trans_name Sema4f-004
OTTP OTTMUSP00000074126
OTTT OTTMUST00000141987
Vega_transcript OTTMUST00000141987, Sema4f-004
Vega_translation 197896, OTTMUSP00000074126
Definition protein_id:ENSMUSP00000144745
translation:
LLLLLAMLSAPVCGRVPRSVPRTSLPISG

Chromosome 6
Length
Position(start - end)
2338
82937206 - 82939545
Orient to Chromosome minus
Link Location : (6:82937206-82939545)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sema4f (ENSMUSG00000000627)
Transcript ID ENSMUST00000203271
Reports
substitution
cSNPs0
Insertion16
Deletion27
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000203271)
LLLLLAMLSAPVCGRVPRSVPRTSLPISG*
MSMv4 transcript
LLLLLAMLSAPVCGRVPRSVPRTSLPISG*
homology100.00 (30 / 30)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sema4f (ENSMUSG00000000627)
Transcript ID ENSMUST00000203271
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAGTGGGACCATTAACAATGTCTACTTGATAGAGTCTAGAACCACCCAGA
GACAAAACTGGACGAGCTACTGTGAGGGAGTCTCTCGATTTTGTTGAGGTGGGAAGACCC
ACCCTGACTATGGATGGCACCATACTCTGGGCTAAGCTCTCTTCTTCCTATTGCAGATGC
AATGTGACCAGACTTTTCAGTTTTTTGCCACCCTGCTTTTCCATCATGGCAGACTATATC
TTCCAACTGTGAACCAAAATAAACCCTTCCTTAAGTTGGACCTTAGCAACGAGAAAAGTA
ACTAATATATTCATAAGTATATTTGCATTTTAATTTATTTATTGTGTGTATGTGTGTTGG
AGGCCATTAGTACCATGGCGTGCATGTGGAAGTCAGAGGACCATCTGAGCAAGTGGATTC
TCTGCTTTCTATGTTGTTGGGTCCCGGGGTGGGGGCAGTGGCTAAATCCAACTCAGACTT
CAAGTTTAGCAGCTGGCCCCTTATACTCACTGAGCCATCTTACAGGAACAAAAAAAATAA
ATAAAAATCTGAAAAATCTGGTGCTCTTAGTAGCACAGATATGGATATTTGGGGATTTGG
AGCAACTGCTACAAATTCACTGGTGACTCCAGTCCTAGGAACGTTTCCATCCTTCTGAGG
AAGAAACCCACACCTACACCTGTCCTAGCTCCGCCTACACCTGGGTAGGGCCTCTCTTCC
TCGTCCCTCCTCCACTCAATTTTCATTGGTTATAGGAAGAAACCGGTCCTCCATTGGTTC
CTTTGTGAGTGGGAGGAGTCGGGTTGTGTTTCATCTCACCGCTGCAGGCCGAGCTCGGCC
GAGGGTACCCGAGAGGGGCCGAGGCCCGCGCAGTAGCGGTACTGAGTAGAGGCTGCCCGA
CGCGCCCCACCCGGCACCAGGCGGAGCCAGAGATGCTGGCCAGGGCCGAGCGGCCCCGCC
CGGGCCCCCGGCCGCCACCGGTCTCTCTCTTCCCGCCGCCGTCGTCGCTG
1 EXON 1 82939461 82939545 - 1 85
CTGCTGCTGCTGCTGGCGATGCTGAGCGCCCCGGTGTGCGGCCGCGTCCCCCGCTCGGTG
CCCAGAACCTCGCTGCCCATCTCCG
INTRON 1 - 2 82937211 82939460 2250
GTAAGATGCAGGAACCCTTGTCCTC..........CTCCCCTCTTCTCTTCCTGCCAGAG
2 EXON 2 82937061 82937210 1 - 150
GCTGACTCCTATCTCACCCGGTTTGCGGCCCCTCATACGTACAATTACTCTGCTCTCCTG
GTGGATCCTGCTTCTCACACACTTTACGTCGGTGCACGGGACAGCATCTTCGCTTTAACC
CTGCCCTTCTCTGGGGAAAAGCCTCGAAGG
INTRON 2 - 3 82935955 82937060 1106
GTGAGAGATGACAGTGGGGTAACCC..........CCTGAAATGAGTTCTTCTTTCTCAG
3 EXON 3 82935895 82935954 - - 60
ATCGACTGGATGGTGCCCGAGACTCACAGACAGAACTGTAGGAAGAAAGGCAAGAAAGAG
INTRON 3 - 4 82930992 82935894 4903
GTAGGTGGAAACCCACACCCTGTCC..........GCCCCCCTCCCCTTCTGGTCTGTAG
4 EXON 4 82930898 82930991 - - 94
GATGTGTCCAGTTTCCAGCAGGTTGAAAGACTTGAGAGTGGCCGGGGGAAATGTCCTTTT
GAGCCAGCTCAACGGTCAGCAGCTGTAATGGCTG
INTRON 4 - 5 82919683 82930897 11215
GTGAGTGGGGAGAGCCAAGAGTCGG..........TCATCTCCTTCCTGTCACCCTGCAG
5 EXON 5 82919563 82919682 - - 120
GGGGCGTCCTCTACACCGCCACTGTGAAAAACTTCCTGGGGACAGAGCCGATTATCTCCC
GAGCTGTGGGTCGAGCTGAGGACTGGATTCGAACAGAGACCTTGTCATCCTGGCTTAATG
INTRON 5 - 6 82919469 82919562 94
GTGGGAAGAGGGACAGGGTCACCTG..........GATCTGAGGTCATTGGTTTCTTCAG
6 EXON 6 82919317 82919468 - - 152
CCCCAGCCTTTGTCGCAGCTATGGTCCTGAGCCCGGCTGAGTGGGGGGATGAAGATGGAG
ACGATGAAATCTTCTTTTTCTTCACGGAGACCTCCCGAGTCTTGGACTCATATGAGCGCA
TCAAGGTCCCACGAGTGGCCCGTGTGTGTGCG
INTRON 6 - 7 82918711 82919316 606
GTGAGAGCTCTGTCCTGGCTGGCTG..........GTTTCCCATGTTCCTGTCACCCCAG
7 EXON 7 82918601 82918710 - - 110
GGGGACCTTGGGGGCCGGAAGACCCTTCAGCAGAGATGGACGACGTTTCTAAAGGCTGAC
CTGCTGTGTCCAGGGCCCGAGCATGGAAGGGCCTCGGGGGTTCTGCAGGA
3' upstream sequence
TATGACAGAGCTTCGACCTCAGCCTGGCGCGGGGACCCCCATCTTTTATGGCATCTTTTC
CTCCCAGTGGTGAGGGGGTCCTGGTGTGGATGACGGGGTGACGGGGGGAGGGGTGTCCGT
GGAGTTGGTATGGTCACTGCAGGTGGACTCTCTTTCCCTCGGCTGCATGGCTCCTGTGTG
CTTCTCGGGGATCCAGTCCTTTGATAAGGGACGAGTTGCTGTCACCTAGCTCTCTCCAGA
TACTTAGCTCCAATCTGTGACTCCTCCAGGGAAGGAGCCGCCATCTCTGCTGTGTGTGCC
TTCCGACCCCAAGACATCCGGGCAGTGCTGAATGGTCCCTTTAGAGAGCTAAAACATGAC
TGCAACAGGGGACTACCTGTCATGGACAACGAGGTGCCCCAGCCCAGACCTGGAGAGGTG
AGGAGGGGGTGGGGAAGGTCTTCATCACAGTCTTGATTTTTTTTTCCACCATCGTAAAGG
ACAAGAGCTTTGCTAAGCATCCCTGATACTTCCTGTTCCCTGAGAAACATTGTCACCCAG
ACCTGTCTCCTTTAGTGCATCACCAACAACATGAAGTTCCAGCAGTTTGGATCCTCACTC
TCCCTGCCAGACCGTGTGCTCACCTTTATCAGAGACCACCCGCTCATGGACAGGCCCGTG
TTTCCAGCTGATGGCCGCCCCCTGCTGGTCACTACGGATACAGCCTATCTCAGAGTTGTG
GCTCACCGGGTGACCAGCCTCTCAGGGAAAGAATATGATGTGCTCTACCTGGGGACAGGT
ATACAGCATCAAGCAAGTTGCCCATAACGTCACCACAGAGAGGTGCCCTGTGACATCCAG
GCACCAGGGTTCCAGGCACAGTGCCAGCTAAGCCATTTTCTTGCCCTTTTCCTTCCTCCC
AGAGGATGGGCACCTCCACCGGGCTGTACGCATCGGAGCTCAGCTCAGTGTCCTGGAGGA
TCTGGCCTTGTTCCCGGAACCACAGCCGGTTGAGAGCATG..........

Sequence Detail Report

Gene Symbol (Gene ID) Sema4f (ENSMUSG00000000627)
Transcript ID ENSMUST00000203271
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 30 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information