VariantTable
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name
Pkp1 (ENSMUSG00000026413)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pkp1
note
: plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
name
Pkp1 (ENSMUSG00000026413)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027667
name
Pkp1 (ENSMUSG00000026413)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000163260
name
Pkp1 (ENSMUSG00000026413)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000189805
name
Pkp1 (ENSMUSG00000026413)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS15322.1
Uniprot/SWISSPROT:
P97350
RefSeq_peptide:
NP_062619
RefSeq_mRNA:
NM_019645.2
RefSeq_mRNA_predicted:
XM_006529251.1
RefSeq_peptide_predicted:
XP_006529314.1
Vega_transcript:
OTTMUST00000053857
Vega_transcript:
Pkp1-001
UCSC:uc007cub.1
EMBL:
BC139041
EMBL:
BC139042
EMBL:
Y07941
GO:
GO:0005515
GO:
GO:0005521
GO:
GO:0005521
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005886
GO:
GO:0005886
GO:
GO:0016337
GO:
GO:0030057
GO:
GO:0043231
GO:
GO:0043231
GO:
GO:0045110
GO:
GO:0045110
GO:
GO:0070062
GO:
GO:0070062
MGI_trans_name:
Pkp1-001
Vega_translation:
180869
Vega_translation:
OTTMUSP00000025630
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005886
goslim_goa:
GO:0007010
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043226
protein_id:
AAI39042.1
protein_id:
AAI39043.1
protein_id:
CAA69240.1
OTTP:
OTTMUSP00000025630
OTTT:
OTTMUST00000053857
UniParc:
UPI0000028D2A
definition
note
: transcript_id=ENSMUST00000027667
protein_id
: ENSMUSP00000027667
translation
: MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDGLADNYNNYGTTSRSSYFSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGSCATPGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGHKTTQNRCSFYSTCSGQKAVKKCPVRPPSCTSKQDPVYVPPISCNKDLSFGHSRASSKICSEDIECSGLTIPKAVQYLCSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTPNKLETRRQNGIREAVSLLRRSGSTEIQKQLTGLLWNLSSTDELKEELVADALPVLTDRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCILHNLSYRLDAEVPTRYRQLEYNTRNAYTEKSSTGCFSNRGDKMMNNNYDCPLPEEETNPKGSSWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSNGMSQLIGIKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPVLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMTSQPQMAKQYFSNSMLNNVFNLCRNTASSPKAAEAARLLLSDMWASKELQSVLRQQGFDRNMMGNIAGANNLRNFTSRF
name
Pkp1 (ENSMUSG00000026413)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS15322.1
Uniprot/SWISSPROT:
P97350
Vega_transcript:
OTTMUST00000090231
Vega_transcript:
Pkp1-003
UCSC:uc011wss.1
EMBL:
BC139041
EMBL:
BC139042
EMBL:
Y07941
GO:
GO:0005515
GO:
GO:0005521
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005886
GO:
GO:0016337
GO:
GO:0030057
GO:
GO:0043231
GO:
GO:0045110
GO:
GO:0070062
MGI_trans_name:
Pkp1-003
Vega_translation:
180870
Vega_translation:
OTTMUSP00000049458
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005886
goslim_goa:
GO:0007010
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043226
protein_id:
AAI39042.1
protein_id:
AAI39043.1
protein_id:
CAA69240.1
OTTP:
OTTMUSP00000049458
OTTT:
OTTMUST00000090231
UniParc:
UPI0000028D2A
definition
note
: transcript_id=ENSMUST00000163260
protein_id
: ENSMUSP00000128418
translation
: MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDGLADNYNNYGTTSRSSYFSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGSCATPGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGHKTTQNRCSFYSTCSGQKAVKKCPVRPPSCTSKQDPVYVPPISCNKDLSFGHSRASSKICSEDIECSGLTIPKAVQYLCSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTPNKLETRRQNGIREAVSLLRRSGSTEIQKQLTGLLWNLSSTDELKEELVADALPVLTDRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCILHNLSYRLDAEVPTRYRQLEYNTRNAYTEKSSTGCFSNRGDKMMNNNYDCPLPEEETNPKGSSWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSNGMSQLIGIKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPVLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMTSQPQMAKQYFSNSMLNNVFNLCRNTASSPKAAEAARLLLSDMWASKELQSVLRQQGFDRNMMGNIAGANNLRNFTSRF
name
Pkp1 (ENSMUSG00000026413)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000126910
Vega_transcript:
Pkp1-004
Uniprot/SPTREMBL:
A0A087WS37
UCSC:uc011wss.1
EMBL:
AC108813
EMBL:
AC162441
GO:
GO:0005515
GO:
GO:0005521
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005886
GO:
GO:0016337
GO:
GO:0030057
GO:
GO:0043231
GO:
GO:0045110
GO:
GO:0070062
MGI_trans_name:
Pkp1-004
Vega_translation:
180871
Vega_translation:
OTTMUSP00000068594
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005886
goslim_goa:
GO:0007010
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043226
OTTP:
OTTMUSP00000068594
OTTT:
OTTMUST00000126910
UniParc:
UPI0004620F4A
definition
note
: transcript_id=ENSMUST00000189805
protein_id
: ENSMUSP00000140883
translation
: MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDGLADNYNNYGTTSRSSYFSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGSCATPGAGSDICFMQKIKASRRSAVRTLSVVG
name
type
misc_feature
link
xref
definition
note
: contig AC108813.8 42267..198759(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.