VariantTable
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BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Msx3 (ENSMUSG00000025469)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Msx3
note
: msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
name
Msx3 (ENSMUSG00000025469)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000055353
name
Msx3 (ENSMUSG00000025469)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000172775
name
Msx3 (ENSMUSG00000025469)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide_predicted:
XP_006536224.1
Vega_transcript:
Msx3-002
Vega_transcript:
OTTMUST00000096751
Uniprot/SPTREMBL:
G3X9C7
UCSC:uc012fwf.1
EMBL:
AC109205
EMBL:
CH466531
GO:
GO:0000122
GO:
GO:0003677
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0006357
GO:
GO:0035067
MGI_trans_name:
Msx3-002
Vega_translation:
202884
Vega_translation:
OTTMUSP00000054093
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
protein_id:
EDL17893.1
OTTP:
OTTMUSP00000054093
OTTT:
OTTMUST00000096751
UniParc:
UPI00015471A1
definition
note
: transcript_id=ENSMUST00000055353
protein_id
: ENSMUSP00000057312
translation
: MARATFDMNAAGLEARGGGHTEHGPLPFSVESLLEAERVPGSESGELGVERPLGASKPGAWPPPVAHSCPPRKCSVSRSQALKSDRAVKARKSKVPRALHPAPSANTKPIANHGRHSPPRSCWRLSASFTRSNTYPLRSAPSSPAA
name
Msx3 (ENSMUSG00000025469)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS21961.1
Uniprot/SWISSPROT:
P70354
RefSeq_peptide:
NP_034966
RefSeq_mRNA:
NM_010836.3
Vega_transcript:
Msx3-001
Vega_transcript:
OTTMUST00000096752
Uniprot/SPTREMBL:
B2RPS3
UCSC:uc012fwf.1
EMBL:
AF060229
EMBL:
BC051983
EMBL:
BC137577
EMBL:
BC137578
EMBL:
CH466531
EMBL:
M38577
EMBL:
U62523
EMBL:
X96518
GO:
GO:0000122
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0006351
GO:
GO:0006357
GO:
GO:0007275
GO:
GO:0035067
GO:
GO:0043565
MGI_trans_name:
Msx3-001
Vega_translation:
202885
Vega_translation:
OTTMUSP00000054094
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
protein_id:
AAA37825.1
protein_id:
AAB49935.1
protein_id:
AAC15459.1
protein_id:
AAH51983.1
protein_id:
AAI37578.1
protein_id:
AAI37579.1
protein_id:
CAA65367.1
protein_id:
EDL17892.1
OTTP:
OTTMUSP00000054094
OTTT:
OTTMUST00000096752
UniParc:
UPI000002262C
definition
note
: transcript_id=ENSMUST00000172775
protein_id
: ENSMUSP00000133484
translation
: MARATFDMNAAGLEARGGGHTEHGPLPFSVESLLEAERVPGSESGELGVERPLGASKPGAWPPPVAHSCPPRAPSPPPCTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKLAAKPLLPAAFALPFPLGTQLHSSAATFGGNAVPGILAGPVAAYGMYYLS
name
type
misc_feature
link
xref
definition
note
: contig AC109205.12 25917..225302(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.