VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Thbd (ENSMUSG00000074743)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Thbd
note
: thrombomodulin [Source:MGI Symbol;Acc:MGI:98736]
name
Thbd (ENSMUSG00000074743)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000099270
name
Thbd (ENSMUSG00000074743)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS16838.1
Uniprot/SWISSPROT:
P15306
RefSeq_peptide:
NP_033404
RefSeq_mRNA:
NM_009378.3
Vega_transcript:
OTTMUST00000037329
Vega_transcript:
Thbd-001
Uniprot/SPTREMBL:
Q543W3
UCSC:uc008mtd.2
Fantom:
B130014A08
EMBL:
AK044928
EMBL:
BC019154
EMBL:
CH466519
EMBL:
CT010375
EMBL:
X14432
GO:
GO:0004888
GO:
GO:0005509
GO:
GO:0005615
GO:
GO:0005886
GO:
GO:0005886
GO:
GO:0005887
GO:
GO:0007165
GO:
GO:0007565
GO:
GO:0007596
GO:
GO:0009986
GO:
GO:0009986
GO:
GO:0010165
GO:
GO:0030195
GO:
GO:0032496
GO:
GO:0050819
GO:
GO:0051591
MGI_trans_name:
Thbd-001
Vega_translation:
185377
Vega_translation:
OTTMUSP00000016721
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0006950
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0043167
protein_id:
AAH19154.1
protein_id:
BAC32146.1
protein_id:
CAA32597.1
protein_id:
CAJ18582.1
protein_id:
EDL28532.1
OTTP:
OTTMUSP00000016721
OTTT:
OTTMUST00000037329
Reactome:
R-MMU-109582
Reactome:
R-MMU-140875
Reactome:
R-MMU-140877
Reactome:
R-MMU-202733
UniParc:
UPI000000197C
definition
note
: transcript_id=ENSMUST00000099270
protein_id
: ENSMUSP00000096877
translation
: MLGIFFLGVLAPASLGLSALAKLQPTGSQCVEHECFALFQGPATFLDASQACQRLQGHLMTVRSSVAADVISLLLSQSSMDLGPWIGLQLPQGCDDPVHLGPLRGFQWVTGDNHTSYSRWARPNDQTAPLCGPLCVTVSTATEAAPGEPAWEEKPCETETQGFLCEFYFTASCRPLTVNTRDPEAAHISSTYNTPFGVSGADFQTLPVGSSAAVEPLGLELVCRAPPGTSEGHWAWEATGAWNCSVENGGCEYLCNRSTNEPRCLCPRDMDLQADGRSCARPVVQSCNELCEHFCVSNAEVPGSYSCMCETGYQLAADGHRCEDVDDCKQGPNPCPQLCVNTKGGFECFCYDGYELVDGECVELLDPCFGSNCEFQCQPVSPTDYRCICAPGFAPKPDEPHKCEMFCNETSCPADCDPNSPTVCECPEGFILDEGSVCTDIDECSQGECFTSECRNFPGSYECICGPDTALAGQISKDCDPIPVREDTKEEEGSGEPPVSPTPGSPTGPPSARPVHSGVLIGISIASLSLVVALLALLCHLRKKQGAARAELEYKCASSAKEVVLQHVRTDRTLQKF
name
type
misc_feature
link
xref
definition
note
: contig AL935149.16 2001..122010(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.