VariantTable
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BAC clone ordering.
cursor point :
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name
Gdap1 (ENSMUSG00000025777)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Gdap1
note
: ganglioside-induced differentiation-associated- protein 1 [Source:MGI Symbol;Acc:MGI:1338002]
name
Gdap1 (ENSMUSG00000025777)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000026879
name
Gdap1 (ENSMUSG00000025777)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000189736
name
Gdap1 (ENSMUSG00000025777)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14834.1
Uniprot/SWISSPROT:
O88741
RefSeq_peptide:
NP_034397
RefSeq_mRNA:
NM_010267.3
Vega_transcript:
Gdap1-001
Vega_transcript:
OTTMUST00000053130
UCSC:uc007akc.2
Fantom:
B230205B15
Fantom:
B230206A18
Fantom:
C530015K17
Fantom:
D130013N20
EMBL:
AK020988
EMBL:
AK045460
EMBL:
AK049655
EMBL:
AK083814
EMBL:
BC048177
EMBL:
BC051135
EMBL:
Y17850
GO:
GO:0000266
GO:
GO:0000266
GO:
GO:0003674
GO:
GO:0004364
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0005739
GO:
GO:0005739
GO:
GO:0006626
GO:
GO:0006626
GO:
GO:0006749
GO:
GO:0008053
GO:
GO:0008053
GO:
GO:0016020
GO:
GO:0016020
GO:
GO:0031307
GO:
GO:0031307
GO:
GO:0032526
MGI_trans_name:
Gdap1-001
Vega_translation:
178792
Vega_translation:
OTTMUSP00000025245
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0006605
goslim_goa:
GO:0006790
goslim_goa:
GO:0006810
goslim_goa:
GO:0007005
goslim_goa:
GO:0008150
goslim_goa:
GO:0016765
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0061024
protein_id:
AAH48177.1
protein_id:
AAH51135.1
protein_id:
BAB32270.1
protein_id:
BAC32380.1
protein_id:
BAC33861.1
protein_id:
BAC39027.1
protein_id:
CAA76893.1
OTTP:
OTTMUSP00000025245
OTTT:
OTTMUST00000053130
UniParc:
UPI00000226DF
definition
note
: transcript_id=ENSMUST00000026879
protein_id
: ENSMUSP00000026879
translation
: MARRQDEARAGVPLRVEGPPDKEVHLILYHWTHSFSSQKVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSAGEVPVLVHGENIICEATQIIDYLEQTFLDERTPRLMPDEGSMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGNQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGHGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGSTLVVGLLVGMGYFAFMLFRRRLGSMILALRPRPNYF
name
type
misc_feature
link
xref
definition
note
: contig AC127359.4 31390..185255(1)
name
Gdap1 (ENSMUSG00000025777)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000123682
Vega_transcript:
OTTMUST00000123682
MGI_trans_name:
Gdap1-004
OTTT:
OTTMUST00000123682
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000189465
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
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RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.