VariantTable
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BAC clone ordering.
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On read coverage region : Click to browse alignment view.
name
Tnfrsf12a (ENSMUSG00000023905)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Tnfrsf12a
note
: tumor necrosis factor receptor superfamily, member 12a [Source:MGI Symbol;Acc:MGI:1351484]
name
Tnfrsf12a (ENSMUSG00000023905)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000167059
name
Tnfrsf12a (ENSMUSG00000023905)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000024698
name
Tnfrsf12a (ENSMUSG00000023905)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS50011.1
RefSeq_peptide:
NP_001155218
RefSeq_mRNA:
NM_001161746.1
Uniprot/SPTREMBL:
E9PZT5
UCSC:uc012alx.1
EMBL:
AC154766
GO:
GO:0001726
GO:
GO:0005515
GO:
GO:0005886
GO:
GO:0006931
GO:
GO:0007155
GO:
GO:0009986
GO:
GO:0043065
GO:
GO:0045773
GO:
GO:0061041
GO:
GO:0097191
GO:
GO:2001238
MGI_trans_name:
Tnfrsf12a-202
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0008219
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
UniParc:
UPI0001AB178D
definition
note
: transcript_id=ENSMUST00000167059
protein_id
: ENSMUSP00000131574
translation
: MASAWPRSLPQILVLGFGLVLMRAAAGEQAPGAAAPPAHFRLLWPILGGALSLVLVLALVSSFLVWRRCRRREKFTTPIEETGGEGCPGVALIQ
name
Tnfrsf12a (ENSMUSG00000023905)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS28456.1
Uniprot/SWISSPROT:
Q9CR75
RefSeq_peptide:
NP_038777
RefSeq_mRNA:
NM_013749.2
UCSC:uc008asv.2
Fantom:
1500041E19
Fantom:
1600012O05
Fantom:
1600023P06
EMBL:
AF156164
EMBL:
AK005382
EMBL:
AK005530
EMBL:
AK160136
EMBL:
BC025860
GO:
GO:0001525
GO:
GO:0001726
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005886
GO:
GO:0006931
GO:
GO:0007155
GO:
GO:0009986
GO:
GO:0016021
GO:
GO:0043065
GO:
GO:0043065
GO:
GO:0045765
GO:
GO:0045773
GO:
GO:0061041
GO:
GO:0061041
GO:
GO:0097191
GO:
GO:2001238
GO:
GO:2001238
MGI_trans_name:
Tnfrsf12a-201
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0008219
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAF07882.1
protein_id:
AAH25860.1
protein_id:
BAB23989.1
protein_id:
BAB24101.1
protein_id:
BAE35650.1
Reactome:
R-MMU-1280215
Reactome:
R-MMU-168256
Reactome:
R-MMU-5668541
Reactome:
R-MMU-5676594
UniParc:
UPI00000221B1
definition
note
: transcript_id=ENSMUST00000024698
protein_id
: ENSMUSP00000024698
translation
: MASAWPRSLPQILVLGFGLVLMRAAAGEQAPGTSPCSSGSSWSADLDKCMDCASCPARPHSDFCLGCAAAPPAHFRLLWPILGGALSLVLVLALVSSFLVWRRCRRREKFTTPIEETGGEGCPGVALIQ
name
type
misc_feature
link
xref
definition
note
: contig AC154766.2 1..156237(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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show
B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.