VariantTable
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name
Ighmbp2 (ENSMUSG00000024831)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ighmbp2
note
: immunoglobulin mu binding protein 2 [Source:MGI Symbol;Acc:MGI:99954]
name
Mrpl21 (ENSMUSG00000024829)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Mrpl21
note
: mitochondrial ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:2660674]
name
Ighmbp2 (ENSMUSG00000024831)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000119292
name
Ighmbp2 (ENSMUSG00000024831)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000025751
name
Ighmbp2 (ENSMUSG00000024831)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000154537
name
Mrpl21 (ENSMUSG00000024829)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000025745
name
Mrpl21 (ENSMUSG00000024829)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000025743
name
Mrpl21 (ENSMUSG00000024829)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000141610
name
Ighmbp2 (ENSMUSG00000024831)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Ighmbp2-003
Vega_transcript:
OTTMUST00000070067
Uniprot/SPTREMBL:
D3Z5P5
UCSC:uc008fwa.1
EMBL:
AC148174
EMBL:
AL626765
GO:
GO:0000049
GO:
GO:0003677
GO:
GO:0003723
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0008094
GO:
GO:0008134
GO:
GO:0008186
GO:
GO:0016020
GO:
GO:0021522
GO:
GO:0032508
GO:
GO:0032575
GO:
GO:0043022
GO:
GO:0043025
GO:
GO:0043141
GO:
GO:0051260
MGI_trans_name:
Ighmbp2-003
Vega_translation:
221946
Vega_translation:
OTTMUSP00000035663
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0003723
goslim_goa:
GO:0004386
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0016887
goslim_goa:
GO:0022607
goslim_goa:
GO:0030154
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
OTTP:
OTTMUSP00000035663
OTTT:
OTTMUST00000070067
UniParc:
UPI00015F3B49
definition
note
: transcript_id=ENSMUST00000119292
protein_id
: ENSMUSP00000113438
translation
: MASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQLNLDRENTYRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDILLGSSTPSPAMEIPPLSFYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSQGHSRVPKPKCPSTSIRKPASDQESGQETRAAPRHGRRKPSEKPPGSHVQSQHSSSANGSDRTGGPDRTEHFRATIEEFVASKESQLEFPTSLSSHDRLRVHQLAEEFGLRHDSTGEGKARHITVSRRSPASSGSVAPQPSSPPSPAQAEPEPRAEEPVTVVQAHCPVQLDLKALHLERLQRQQSSQAQTAKGQPGGDSRPQKASQKKKKKEPKDPRLWRKGSCPCPPED
name
Ighmbp2 (ENSMUSG00000024831)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS29393.1
RefSeq_peptide:
NP_033238
RefSeq_mRNA:
NM_009212.2
Vega_transcript:
Ighmbp2-001
Vega_transcript:
OTTMUST00000070065
Uniprot/SPTREMBL:
A0A0B4J1E3
UCSC:uc008fwa.1
EMBL:
AC148174
EMBL:
AL626765
EMBL:
CH466612
GO:
GO:0000049
GO:
GO:0000049
GO:
GO:0003677
GO:
GO:0003723
GO:
GO:0003723
GO:
GO:0005515
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0008094
GO:
GO:0008094
GO:
GO:0008134
GO:
GO:0008134
GO:
GO:0008186
GO:
GO:0008186
GO:
GO:0008270
GO:
GO:0016020
GO:
GO:0016020
GO:
GO:0021522
GO:
GO:0032508
GO:
GO:0032508
GO:
GO:0032575
GO:
GO:0032575
GO:
GO:0032797
GO:
GO:0043022
GO:
GO:0043022
GO:
GO:0043025
GO:
GO:0043141
GO:
GO:0043141
GO:
GO:0051260
GO:
GO:0051260
MGI_trans_name:
Ighmbp2-001
Vega_translation:
221944
Vega_translation:
OTTMUSP00000035661
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0003723
goslim_goa:
GO:0004386
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0016887
goslim_goa:
GO:0022607
goslim_goa:
GO:0030154
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
protein_id:
EDL32928.1
OTTP:
OTTMUSP00000035661
OTTT:
OTTMUST00000070065
UniParc:
UPI000002245B
definition
note
: transcript_id=ENSMUST00000025751
protein_id
: ENSMUSP00000025751
translation
: MASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQLNLDRENTYRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDILLGSSTPSPAMEIPPLSFYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSQGHSRVPKPKCPSTSIRKPASDQESGQETRAAPRHGRRKPSEKPPGSHVQSQHSSSANGSDRTGGPDRTEHFRATIEEFVASKESQLEFPTSLSSHDRLRVHQLAEEFGLRHDSTGEGKARHITVSRRSPASSGSVAPQPSSPPSPAQAEPEPRAEEPVTVVQAHCPVQLDLKALHLERLQRQQSSQAQTAKGQPGGDSRPQKASQKKKKKEPKGPVMALPCEEDFDALVSAVVKADNTCSFSKCSASTTTLGQFCMHCSHRYCLSHHLPEIHGCGEKARAHARQRISREGVLYAGSGTKDRALDPAKRAQLQRRLDKKLGELSSQRTSRKKEKERGT
name
Ighmbp2 (ENSMUSG00000024831)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Ighmbp2-002
Vega_transcript:
OTTMUST00000070066
Uniprot/SPTREMBL:
D6RFT3
UCSC:uc008fwa.1
EMBL:
AC148174
EMBL:
AL626765
GO:
GO:0000049
GO:
GO:0003677
GO:
GO:0003723
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0008094
GO:
GO:0008134
GO:
GO:0008186
GO:
GO:0016020
GO:
GO:0021522
GO:
GO:0032508
GO:
GO:0032575
GO:
GO:0043022
GO:
GO:0043025
GO:
GO:0043141
GO:
GO:0051260
MGI_trans_name:
Ighmbp2-002
Vega_translation:
221945
Vega_translation:
OTTMUSP00000035662
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0003723
goslim_goa:
GO:0004386
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0016887
goslim_goa:
GO:0022607
goslim_goa:
GO:0030154
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
OTTP:
OTTMUSP00000035662
OTTT:
OTTMUST00000070066
UniParc:
UPI000161167D
definition
note
: transcript_id=ENSMUST00000154537
protein_id
: ENSMUSP00000122827
translation
: MASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQLNLDRENTYRLLKLANDVTYKRLKNPTLFLQHNSGPFPERSCVLCTGPERTCHHPWASWHWENHNCGGNNPSSCEARLKGPVLCSLQHRCGQPGGASGSVQEADSAPGSPRPPPGVRSAPLTGCSASTQ
name
Mrpl21 (ENSMUSG00000024829)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS29394.1
Uniprot/SWISSPROT:
Q9D1N9
RefSeq_peptide:
NP_758456
RefSeq_mRNA:
NM_172252.3
Vega_transcript:
Mrpl21-002
Vega_transcript:
OTTMUST00000069983
UCSC:uc008fwe.1
Fantom:
1110002D22
Fantom:
2810021L08
Fantom:
A330106L17
EMBL:
AK003285
EMBL:
AK012784
EMBL:
AK020739
EMBL:
BC028768
GO:
GO:0003735
GO:
GO:0005739
GO:
GO:0005840
GO:
GO:0006412
GO:
GO:0008150
GO:
GO:0044822
GO:
GO:0044822
MGI_trans_name:
Mrpl21-002
Vega_translation:
221948
Vega_translation:
OTTMUSP00000035612
goslim_goa:
GO:0003674
goslim_goa:
GO:0003723
goslim_goa:
GO:0003735
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0005840
goslim_goa:
GO:0006412
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
protein_id:
AAH28768.1
protein_id:
BAB22690.1
protein_id:
BAB28467.1
protein_id:
BAB32196.1
OTTP:
OTTMUSP00000035612
OTTT:
OTTMUST00000069983
Reactome:
R-MMU-1852241
Reactome:
R-MMU-5368286
Reactome:
R-MMU-5368287
Reactome:
R-MMU-5389840
Reactome:
R-MMU-5419276
UniParc:
UPI0000029B5C
definition
note
: transcript_id=ENSMUST00000025745
protein_id
: ENSMUSP00000025745
translation
: MAAAIAASALPGAFGRLVSVCSRSILASQGSGSASLWSASRRFNSQSASYPQGYVPKTSLSSPPWQEVVLPDPVEETRHHAEVVKRVNELIATGQYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLVGADNFTLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKNTDPSGYLCLSACQREQFSEVGPTLHLV
name
Mrpl21 (ENSMUSG00000024829)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q9D1N9
RefSeq_peptide_predicted:
XP_006531840.1
Vega_transcript:
Mrpl21-001
Vega_transcript:
OTTMUST00000069982
UCSC:uc008fwd.1
Fantom:
1110002D22
Fantom:
2810021L08
Fantom:
A330106L17
EMBL:
AK003285
EMBL:
AK012784
EMBL:
AK020739
EMBL:
BC028768
GO:
GO:0003735
GO:
GO:0005739
GO:
GO:0005840
GO:
GO:0006412
GO:
GO:0008150
GO:
GO:0044822
MGI_trans_name:
Mrpl21-001
Vega_translation:
221947
Vega_translation:
OTTMUSP00000035611
goslim_goa:
GO:0003674
goslim_goa:
GO:0003723
goslim_goa:
GO:0003735
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0005840
goslim_goa:
GO:0006412
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
protein_id:
AAH28768.1
protein_id:
BAB22690.1
protein_id:
BAB28467.1
protein_id:
BAB32196.1
OTTP:
OTTMUSP00000035611
OTTT:
OTTMUST00000069982
Reactome:
R-MMU-1852241
Reactome:
R-MMU-5368286
Reactome:
R-MMU-5368287
Reactome:
R-MMU-5389840
Reactome:
R-MMU-5419276
UniParc:
UPI0000029B38
definition
note
: transcript_id=ENSMUST00000025743
protein_id
: ENSMUSP00000025743
translation
: MAAAIAASALPGAFGRLVSVCSRSILASQGSGSASLWSASRRFNSQSASYPQGYVPKTSLSSPPWQEVVLPDPVEETRHHAEVVKRVNELIATGQYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLVGADNFTLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIAPRLL
name
Mrpl21 (ENSMUSG00000024829)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Mrpl21-005
Vega_transcript:
OTTMUST00000069986
Uniprot/SPTREMBL:
D6RJ32
EMBL:
AL626765
GO:
GO:0005739
GO:
GO:0008150
GO:
GO:0044822
MGI_trans_name:
Mrpl21-005
Vega_translation:
221949
Vega_translation:
OTTMUSP00000035613
goslim_goa:
GO:0003674
goslim_goa:
GO:0003723
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
OTTP:
OTTMUSP00000035613
OTTT:
OTTMUST00000069986
UniParc:
UPI000161167E
definition
note
: transcript_id=ENSMUST00000141610
protein_id
: ENSMUSP00000120330
translation
: MAAAIAASALPGAFGRLVSVCSRSILASQGSGSASLWSASRRFNSQSASYPQG
name
type
misc_feature
link
xref
definition
note
: contig AL626765.22 54889..206196(1)
name
Mrpl21 (ENSMUSG00000024829)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000069984
Vega_transcript:
OTTMUST00000069984
MGI_trans_name:
Mrpl21-003
OTTT:
OTTMUST00000069984
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000139844
name
Mrpl21 (ENSMUSG00000024829)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000069985
Vega_transcript:
OTTMUST00000069985
MGI_trans_name:
Mrpl21-004
OTTT:
OTTMUST00000069985
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000155870
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.