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name
Sox2ot (ENSMUSG00000105265)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sox2ot
note
: SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
name
Sox2 (ENSMUSG00000074637)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sox2
note
: SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
name
Sox2 (ENSMUSG00000074637)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000099151
name
Sox2 (ENSMUSG00000074637)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS38413.1
RefSeq_peptide:
NP_035573
RefSeq_mRNA:
NM_011443.3
Vega_transcript:
OTTMUST00000050334
Vega_transcript:
Sox2-001
Uniprot/SPTREMBL:
Q60I23
UCSC:uc008oxu.1
EMBL:
AB108673
EMBL:
AL606746
EMBL:
BC057574
EMBL:
CH466530
GO:
GO:0000976
GO:
GO:0001077
GO:
GO:0001649
GO:
GO:0001654
GO:
GO:0001714
GO:
GO:0003677
GO:
GO:0003700
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0005829
GO:
GO:0006355
GO:
GO:0007050
GO:
GO:0009611
GO:
GO:0010468
GO:
GO:0021983
GO:
GO:0021984
GO:
GO:0022409
GO:
GO:0030900
GO:
GO:0035019
GO:
GO:0035198
GO:
GO:0042246
GO:
GO:0043281
GO:
GO:0043410
GO:
GO:0043565
GO:
GO:0044212
GO:
GO:0045597
GO:
GO:0045893
GO:
GO:0045944
GO:
GO:0045944
GO:
GO:0048839
GO:
GO:0050680
GO:
GO:0070848
GO:
GO:0090090
MGI_trans_name:
Sox2-001
Vega_translation:
186877
Vega_translation:
OTTMUSP00000023485
goslim_goa:
GO:0003674
protein_id:
AAH57574.1
protein_id:
BAC75668.1
protein_id:
EDL35051.1
OTTP:
OTTMUSP00000023485
OTTT:
OTTMUST00000050334
Reactome:
R-MMU-162582
Reactome:
R-MMU-195721
Reactome:
R-MMU-201681
Reactome:
R-MMU-3769402
UniParc:
UPI0000161D15
definition
note
: transcript_id=ENSMUST00000099151
protein_id
: ENSMUSP00000096755
translation
: MYNMMETELKPPGPQQASGGGGGGGNATAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQEQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMAQHYQSGPVPGTAINGTLPLSHM
name
type
STS
link
xref
UniSTS_NUM:272522
UniSTS:PMC304098P3
definition
note
: map_weight=2
standard_name
: PMC304098P3
name
type
misc_feature
link
xref
definition
note
: contig AL606746.17 67288..203345(1)
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095010
Vega_transcript:
OTTMUST00000095010
MGI_trans_name:
Sox2ot-009
OTTT:
OTTMUST00000095010
RNACentral:URS0000780806
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000196243
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095013
Vega_transcript:
OTTMUST00000095013
MGI_trans_name:
Sox2ot-010
OTTT:
OTTMUST00000095013
RNACentral:URS0000787B94
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000200414
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
RefSeq_ncRNA:NR_015580
Vega_transcript:
OTTMUST00000095014
Vega_transcript:
OTTMUST00000095014
UCSC:uc012cor.1
MGI_trans_name:
Sox2ot-001
OTTT:
OTTMUST00000095014
RNACentral:URS000077C131
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000197977
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095017
Vega_transcript:
OTTMUST00000095017
MGI_trans_name:
Sox2ot-013
OTTT:
OTTMUST00000095017
RNACentral:URS0000766911
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000196987
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095018
Vega_transcript:
OTTMUST00000095018
UCSC:uc029ukx.1
MGI_trans_name:
Sox2ot-002
OTTT:
OTTMUST00000095018
RNACentral:URS0000787E6F
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000196850
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095019
Vega_transcript:
OTTMUST00000095019
MGI_trans_name:
Sox2ot-014
OTTT:
OTTMUST00000095019
RNACentral:URS000076BA9D
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000197103
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095020
Vega_transcript:
OTTMUST00000095020
UCSC:uc029ukz.1
MGI_trans_name:
Sox2ot-003
OTTT:
OTTMUST00000095020
RNACentral:URS00007659B8
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000199171
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095021
Vega_transcript:
OTTMUST00000095021
UCSC:uc029uky.1
MGI_trans_name:
Sox2ot-005
OTTT:
OTTMUST00000095021
RNACentral:URS0000763E8C
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000200092
name
Sox2ot (ENSMUSG00000105265)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000095022
Vega_transcript:
OTTMUST00000095022
MGI_trans_name:
Sox2ot-015
OTTT:
OTTMUST00000095022
RNACentral:URS0000770FD5
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000197258
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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show
MSM BAC end pairs :
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show
B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
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show
CHDv1 :
not show
show
NJLv1 :
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show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
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Click to browse alignment view.