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cursor point :
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On read coverage region : Click to browse alignment view.
name
Arid5a (ENSMUSG00000037447)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Arid5a
note
: AT rich interactive domain 5A (MRF1-like) [Source:MGI Symbol;Acc:MGI:2443039]
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000126413
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000142319
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000097778
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000116629
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000115031
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000115032
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000137906
name
Arid5a (ENSMUSG00000037447)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000115029
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Arid5a-007
Vega_transcript:
OTTMUST00000051020
Uniprot/SPTREMBL:
D3Z085
UCSC:uc011wjg.1
EMBL:
AC132456
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-007
Vega_translation:
178947
Vega_translation:
OTTMUSP00000023952
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000023952
OTTT:
OTTMUST00000051020
UniParc:
UPI0000F22053
definition
note
: transcript_id=ENSMUST00000126413
protein_id
: ENSMUSP00000115490
translation
: MAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDATGQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAK
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Arid5a-010
Vega_transcript:
OTTMUST00000051023
Uniprot/SPTREMBL:
D3Z7U1
UCSC:uc007apy.2
EMBL:
AC132456
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-010
Vega_translation:
178948
Vega_translation:
OTTMUSP00000023953
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000023953
OTTT:
OTTMUST00000051023
UniParc:
UPI00001ECFFA
definition
note
: transcript_id=ENSMUST00000142319
protein_id
: ENSMUSP00000119953
translation
: MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQSASLGGGGWCSGRVSVGGQQPGDVPRQDNRQGTSAKGDP
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Arid5a-005
Vega_transcript:
OTTMUST00000051018
Uniprot/SPTREMBL:
J3KMU9
UCSC:uc007apv.2
EMBL:
AC132456
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-005
Vega_translation:
178950
Vega_translation:
OTTMUSP00000062559
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000062559
OTTT:
OTTMUST00000051018
UniParc:
UPI000268B579
definition
note
: transcript_id=ENSMUST00000116629
protein_id
: ENSMUSP00000136037
translation
: MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQLTCGRSTRQWRSWGPMSW
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q3U108
RefSeq_peptide_predicted:
XP_006495912.1
Vega_transcript:
Arid5a-004
Vega_transcript:
OTTMUST00000051017
UCSC:uc007apy.2
Fantom:
A630003O15
Fantom:
D430024K22
Fantom:
F830019D14
Fantom:
F830033G19
Fantom:
F830108H12
Fantom:
F830226K02
Fantom:
G530022K13
Fantom:
G530141G07
EMBL:
AK041344
EMBL:
AK085015
EMBL:
AK149839
EMBL:
AK150170
EMBL:
AK156376
EMBL:
AK156622
EMBL:
AK156934
EMBL:
AK157607
EMBL:
BC027152
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0006351
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-004
Vega_translation:
178951
Vega_translation:
OTTMUSP00000023951
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0030154
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAH27152.1
protein_id:
BAC30913.1
protein_id:
BAC39338.1
protein_id:
BAE29115.1
protein_id:
BAE29358.1
protein_id:
BAE33692.1
protein_id:
BAE33779.1
protein_id:
BAE33904.1
protein_id:
BAE34133.1
OTTP:
OTTMUSP00000023951
OTTT:
OTTMUST00000051017
UniParc:
UPI00005AD023
definition
note
: transcript_id=ENSMUST00000115031
protein_id
: ENSMUSP00000110683
translation
: MAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQSASLGGGGWCSGRVSVGGQQPGDVPRQDNRQGTSAKGDPGCRQPVGVACEDGASLKARGGVGFSSSWAACPVHNSGPAWECGVTEPDRLPCLFPSVNLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDATGQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRMEAQVGPCPTAPMFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKPKACWVSPMAKVPTERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFLKEVDSKETGGKPAAPGLAVSCLLGPTPGPTPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFPAHLLATTGSSPMAASLMHFPPTPYDAVLRNRLGPASSAWHMPPVTTYAAPHFFHLNTKL
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48239.1
Uniprot/SWISSPROT:
Q3U108
RefSeq_peptide:
NP_001165676
RefSeq_peptide:
NP_001165677.1
RefSeq_mRNA:
NM_001172205.1
RefSeq_mRNA:
NM_001172206.1
Vega_transcript:
Arid5a-002
Vega_transcript:
OTTMUST00000051015
UCSC:uc007apv.2
Fantom:
A630003O15
Fantom:
D430024K22
Fantom:
F830019D14
Fantom:
F830033G19
Fantom:
F830108H12
Fantom:
F830226K02
Fantom:
G530022K13
Fantom:
G530141G07
EMBL:
AK041344
EMBL:
AK085015
EMBL:
AK149839
EMBL:
AK150170
EMBL:
AK156376
EMBL:
AK156622
EMBL:
AK156934
EMBL:
AK157607
EMBL:
BC027152
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0005730
GO:
GO:0006351
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-002
Vega_translation:
178952
Vega_translation:
OTTMUSP00000023949
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0030154
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAH27152.1
protein_id:
BAC30913.1
protein_id:
BAC39338.1
protein_id:
BAE29115.1
protein_id:
BAE29358.1
protein_id:
BAE33692.1
protein_id:
BAE33779.1
protein_id:
BAE33904.1
protein_id:
BAE34133.1
OTTP:
OTTMUSP00000023949
OTTT:
OTTMUST00000051015
UniParc:
UPI00001ECFF5
definition
note
: transcript_id=ENSMUST00000115032
protein_id
: ENSMUSP00000110684
translation
: MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDATGQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRMEAQVGPCPTAPMFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKPKACWVSPMAKVPTERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFLKEVDSKETGGKPAAPGLAVSCLLGPTPGPTPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFPAHLLATTGSSPMAASLMHFPPTPYDAVLRNRLGPASSAWHMPPVTTYAAPHFFHLNTKL
name
Arid5a (ENSMUSG00000037447)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14876.1
Uniprot/SWISSPROT:
Q3U108
RefSeq_peptide:
NP_666108
RefSeq_mRNA:
NM_145996.4
RefSeq_peptide_predicted:
XP_006495914.1
Vega_transcript:
Arid5a-001
Vega_transcript:
OTTMUST00000051014
UCSC:uc007apu.2
Fantom:
A630003O15
Fantom:
D430024K22
Fantom:
F830019D14
Fantom:
F830033G19
Fantom:
F830108H12
Fantom:
F830226K02
Fantom:
G530022K13
Fantom:
G530141G07
EMBL:
AK041344
EMBL:
AK085015
EMBL:
AK149839
EMBL:
AK150170
EMBL:
AK156376
EMBL:
AK156622
EMBL:
AK156934
EMBL:
AK157607
EMBL:
BC027152
GO:
GO:0002062
GO:
GO:0003682
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005730
GO:
GO:0006351
GO:
GO:0008134
GO:
GO:0035066
GO:
GO:0044212
GO:
GO:0045944
MGI_trans_name:
Arid5a-001
Vega_translation:
178953
Vega_translation:
OTTMUSP00000023948
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0008134
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0030154
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAH27152.1
protein_id:
BAC30913.1
protein_id:
BAC39338.1
protein_id:
BAE29115.1
protein_id:
BAE29358.1
protein_id:
BAE33692.1
protein_id:
BAE33779.1
protein_id:
BAE33904.1
protein_id:
BAE34133.1
OTTP:
OTTMUSP00000023948
OTTT:
OTTMUST00000051014
UniParc:
UPI00000EB871
definition
note
: transcript_id=ENSMUST00000137906
protein_id
: ENSMUSP00000117810
translation
: MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDATGQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRMEAQVGPCPTAPMFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKPKACWVSPMAKVPTERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFLKEVDSKETGGKPAAPGLAVSCLLGPTPGPTPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFPAHLLATTGSSPMAASLMHFPPTPYDAVLRNRLGPASSAWHMPPVTTYAAPHFFHLNTKL
name
type
misc_feature
link
xref
definition
note
: contig AC132456.5 1..167110(-1)
name
Arid5a (ENSMUSG00000037447)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000051022
Vega_transcript:
OTTMUST00000051022
MGI_trans_name:
Arid5a-009
OTTT:
OTTMUST00000051022
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000150747
name
Arid5a (ENSMUSG00000037447)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000051021
Vega_transcript:
OTTMUST00000051021
UCSC:uc056ycj.1
MGI_trans_name:
Arid5a-008
OTTT:
OTTMUST00000051021
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000145179
name
Arid5a (ENSMUSG00000037447)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000051019
Vega_transcript:
OTTMUST00000051019
MGI_trans_name:
Arid5a-006
OTTT:
OTTMUST00000051019
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000124280
name
Arid5a (ENSMUSG00000037447)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000127040
Vega_transcript:
OTTMUST00000127040
MGI_trans_name:
Arid5a-015
OTTT:
OTTMUST00000127040
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000192874
name
Arid5a (ENSMUSG00000037447)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000051025
Vega_transcript:
OTTMUST00000051025
MGI_trans_name:
Arid5a-012
OTTT:
OTTMUST00000051025
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000140218
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.