VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Snrnp48 (ENSMUSG00000021431)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Snrnp48
note
: small nuclear ribonucleoprotein 48 (U11/U12) [Source:MGI Symbol;Acc:MGI:1915047]
name
Snrnp48 (ENSMUSG00000021431)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000091641
name
Snrnp48 (ENSMUSG00000021431)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000178564
name
Snrnp48 (ENSMUSG00000021431)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS36635.1
Uniprot/SWISSPROT:
Q9D361
RefSeq_peptide:
NP_080658
RefSeq_mRNA:
NM_026382.2
UCSC:uc007qdo.1
Fantom:
1810011D10
Fantom:
2810047F05
Fantom:
6530403A03
Fantom:
E330020K23
EMBL:
AK007431
EMBL:
AK012916
EMBL:
AK018315
EMBL:
AK087789
EMBL:
BC021443
EMBL:
BC037073
GO:
GO:0003674
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005689
GO:
GO:0005689
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0006397
GO:
GO:0008150
GO:
GO:0008380
GO:
GO:0046872
MGI_trans_name:
Snrnp48-201
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0006397
goslim_goa:
GO:0008150
goslim_goa:
GO:0034641
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH21443.1
protein_id:
AAH37073.1
protein_id:
BAB25034.3
protein_id:
BAB28547.1
protein_id:
BAB31160.1
protein_id:
BAC40003.1
UniParc:
UPI0000195CD2
definition
note
: transcript_id=ENSMUST00000091641
protein_id
: ENSMUSP00000089230
translation
: METEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDQLDPGDEAEAEDEIAICPYDSNHRMPKSSLTKHMESCRLRKLGYTKEEENEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGKDGDCYSQRMYSSVPVEVPLNHKRSVCDLTQTDRLALYDFVIEETKKKRSGPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSSHWQEEQGRAGDAAEKNEERRSASVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSESRRRKERDGERHHSHKRRKQKI
name
Snrnp48 (ENSMUSG00000021431)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SPTREMBL:
J3QMA8
UCSC:uc007qdo.1
EMBL:
AC124549
EMBL:
AC140331
GO:
GO:0003674
GO:
GO:0005654
GO:
GO:0005689
GO:
GO:0005737
GO:
GO:0008150
MGI_trans_name:
Snrnp48-202
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
UniParc:
UPI0002747221
definition
note
: transcript_id=ENSMUST00000178564
protein_id
: ENSMUSP00000136202
translation
: METEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDQLDPGDEAEAEDEIAICPYDSNHRMPKSSLTKHMESCRLRKLGYTKEEENEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGKDGDCYSQRMYSSVPVEVPLNHKRSVCDLTQTDRLALYDFVIEETKHVRVIRDVIKVHMEELSSHWQEEQGRAGDAAEKNEERRSASVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSESRRRKERDGERHHSHKRRKQKI
name
type
misc_feature
link
xref
definition
note
: contig AC124549.5 61939..199240(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.