VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Txndc5 (ENSMUSG00000038991)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Txndc5
note
: thioredoxin domain containing 5 [Source:MGI Symbol;Acc:MGI:2145316]
name
Txndc5 (ENSMUSG00000038991)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000035988
name
Txndc5 (ENSMUSG00000038991)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000162075
name
Txndc5 (ENSMUSG00000038991)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000160653
name
Txndc5 (ENSMUSG00000038991)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26463.1
Uniprot/SWISSPROT:
Q91W90
RefSeq_peptide:
NP_663342
RefSeq_mRNA:
NM_145367.4
Vega_transcript:
OTTMUST00000089097
Vega_transcript:
Txndc5-001
Uniprot/SPTREMBL:
Q3TEE8
UCSC:uc007qds.2
Fantom:
D230014I09
Fantom:
E430007G22
EMBL:
AK142049
EMBL:
AK169680
EMBL:
AY243534
EMBL:
AY548112
EMBL:
BC016252
EMBL:
BC024505
EMBL:
BC046789
GO:
GO:0003756
GO:
GO:0005515
GO:
GO:0005788
GO:
GO:0006457
GO:
GO:0034976
GO:
GO:0043277
GO:
GO:0045454
GO:
GO:0070062
GO:
GO:0070062
MGI_trans_name:
Txndc5-001
Vega_translation:
214376
Vega_translation:
OTTMUSP00000048637
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005783
goslim_goa:
GO:0006457
goslim_goa:
GO:0006810
goslim_goa:
GO:0006950
goslim_goa:
GO:0008150
goslim_goa:
GO:0016192
goslim_goa:
GO:0016853
goslim_goa:
GO:0042592
goslim_goa:
GO:0043226
protein_id:
AAH16252.2
protein_id:
AAH24505.1
protein_id:
AAH46789.3
protein_id:
AAP68841.1
protein_id:
AAS55652.1
protein_id:
BAE24925.1
protein_id:
BAE41300.1
OTTP:
OTTMUSP00000048637
OTTT:
OTTMUST00000089097
Reactome:
R-MMU-199991
Reactome:
R-MMU-199992
Reactome:
R-MMU-421837
Reactome:
R-MMU-432720
Reactome:
R-MMU-432722
Reactome:
R-MMU-5653656
UniParc:
UPI000000BACF
definition
note
: transcript_id=ENSMUST00000035988
protein_id
: ENSMUSP00000041839
translation
: MPPRPGRLLQPLAGLPALATLLLLLGARKGARAQEVEADSGVEQDPHAKHLYTADMFTHGIQSAAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFVLRQAKDEL
name
Txndc5 (ENSMUSG00000038991)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide:
NP_001276528
RefSeq_mRNA:
NM_001289599.1
Vega_transcript:
OTTMUST00000089099
Vega_transcript:
Txndc5-003
Uniprot/SPTREMBL:
E9PXX7
UCSC:uc007qdr.2
EMBL:
AC154747
GO:
GO:0003756
GO:
GO:0005623
GO:
GO:0006457
GO:
GO:0034976
GO:
GO:0043277
GO:
GO:0045454
GO:
GO:0070062
MGI_trans_name:
Txndc5-003
Vega_translation:
214378
Vega_translation:
OTTMUSP00000048639
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005623
goslim_goa:
GO:0006457
goslim_goa:
GO:0006810
goslim_goa:
GO:0006950
goslim_goa:
GO:0008150
goslim_goa:
GO:0016192
goslim_goa:
GO:0016853
goslim_goa:
GO:0042592
goslim_goa:
GO:0043226
OTTP:
OTTMUSP00000048639
OTTT:
OTTMUST00000089099
UniParc:
UPI0000354800
definition
note
: transcript_id=ENSMUST00000160653
protein_id
: ENSMUSP00000124401
translation
: MCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFVLRQAKDEL
name
type
misc_feature
link
xref
definition
note
: contig AC154747.2 1..199559(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.