VariantTable
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BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Gm20646 (ENSMUSG00000093436)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Gm20646
note
: predicted gene 20646 [Source:MGI Symbol;Acc:MGI:5313093]
name
Pou3f3 (ENSMUSG00000045515)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pou3f3
note
: POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
name
Pou3f3 (ENSMUSG00000045515)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000054883
name
Pou3f3 (ENSMUSG00000045515)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14917.1
Uniprot/SWISSPROT:
P31361
RefSeq_peptide:
NP_032926
RefSeq_mRNA:
NM_008900.2
Vega_transcript:
OTTMUST00000054069
Vega_transcript:
Pou3f3-001
UCSC:uc007auw.1
EMBL:
AC122898
EMBL:
M88299
GO:
GO:0000122
GO:
GO:0001822
GO:
GO:0003677
GO:
GO:0003705
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0006351
GO:
GO:0008284
GO:
GO:0021799
GO:
GO:0021869
GO:
GO:0043066
GO:
GO:0043565
GO:
GO:0045892
GO:
GO:0045893
GO:
GO:0045944
GO:
GO:0071837
GO:
GO:0072218
GO:
GO:0072227
GO:
GO:0072233
GO:
GO:0072236
GO:
GO:0072240
MGI_trans_name:
Pou3f3-001
Vega_translation:
179139
Vega_translation:
OTTMUSP00000025751
goslim_goa:
GO:0001071
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0008150
goslim_goa:
GO:0008283
goslim_goa:
GO:0009058
goslim_goa:
GO:0030154
goslim_goa:
GO:0034641
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
goslim_goa:
GO:0051301
protein_id:
AAA39960.1
OTTP:
OTTMUSP00000025751
OTTT:
OTTMUST00000054069
UniParc:
UPI0000194ED9
definition
note
: transcript_id=ENSMUST00000054883
protein_id
: ENSMUSP00000052088
translation
: MATAASNPYLPGNSLLTAGSIVHSDAAGAGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGREDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHHGLQTSVQ
name
type
misc_feature
link
xref
definition
note
: contig AC122898.4 1..219862(-1)
name
Gm20646 (ENSMUSG00000093436)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000134775
Vega_transcript:
OTTMUST00000134775
Clone_based_vega_transcript:RP23-114H2.1-002
MGI_trans_name:
Gm20646-002
OTTT:
OTTMUST00000134775
RNACentral:URS0000811FA5
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000199521
name
Gm20646 (ENSMUSG00000093436)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000103643
Vega_transcript:
OTTMUST00000103643
Clone_based_vega_transcript:RP23-114H2.1-001
MGI_trans_name:
Gm20646-001
OTTT:
OTTMUST00000103643
RNACentral:URS000077D217
definition
note
: sense_overlapping
note
: transcript_id=ENSMUST00000176807
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.