VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Ercc5 (ENSMUSG00000026048)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ercc5
note
: excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:MGI Symbol;Acc:MGI:103582]
name
Ercc5 (ENSMUSG00000026048)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027214
name
Ercc5 (ENSMUSG00000026048)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS35553.1
RefSeq_peptide:
NP_035859
RefSeq_mRNA:
NM_011729.2
RefSeq_mRNA_predicted:
XM_006495890.1
RefSeq_peptide_predicted:
XP_006495953.1
Vega_transcript:
Ercc5-001
Vega_transcript:
OTTMUST00000050813
Uniprot/SPTREMBL:
E9QM61
UCSC:uc007awi.2
EMBL:
AC123800
GO:
GO:0000405
GO:
GO:0003690
GO:
GO:0003697
GO:
GO:0004520
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005662
GO:
GO:0005675
GO:
GO:0006281
GO:
GO:0006283
GO:
GO:0006289
GO:
GO:0006295
GO:
GO:0008340
GO:
GO:0009411
GO:
GO:0009650
GO:
GO:0010225
GO:
GO:0016591
GO:
GO:0035264
GO:
GO:0042803
GO:
GO:0043066
GO:
GO:0045111
GO:
GO:0047485
MGI_trans_name:
Ercc5-001
Vega_translation:
179190
Vega_translation:
OTTMUSP00000023812
goslim_goa:
GO:0000228
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0004518
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0005856
goslim_goa:
GO:0006259
goslim_goa:
GO:0006950
goslim_goa:
GO:0007568
goslim_goa:
GO:0008150
goslim_goa:
GO:0034641
goslim_goa:
GO:0040007
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000023812
OTTT:
OTTMUST00000050813
Reactome:
R-MMU-109970
Reactome:
R-MMU-110302
Reactome:
R-MMU-110304
Reactome:
R-MMU-73885
Reactome:
R-MMU-73894
Reactome:
R-MMU-73935
Reactome:
R-MMU-73937
Reactome:
R-MMU-73941
UniParc:
UPI00001ED119
definition
note
: transcript_id=ENSMUST00000027214
protein_id
: ENSMUSP00000027214
translation
: MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQDDIYVLPPLPEEEKHSSEEEDEKQWQARMDQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQHIENVQKEMNQQHSGQIQRQYQDEGGFLKEVESRRVVSEDTSHYILIKGIQGKKVMDVDSESLPSSSNVHSVSSNLKSSPHEKVKPEREPEAAPPSPRTLLAIQAAMLGSSSEDEPESREGRQSKERNSGATADAGSISPRTCAAIQKALDDDNDEKVSGSSDDLAEKMLLGSGLEQEEHADETAERGGGVPFDTAPLTPSVTEVKECVTSGSSANGQTDSAHSFTTASHRCDTPKETVSLARAVKEASQISSECEVEGRPAALSPAFIGTPSSHVSGVLSEREPTLAPPTTRTHSDQGIDIHPEDPELQNGLYPLETKCNSSRLSSDDETEGGQNPAPKACSTVHVPAEAMSNLENALPSNAEERGDFQETIQLREVPEAAARELISAPKPMGPMEMESEESESDGSFIEVQSVVSNSELQTESSEASTHLSEKDAEEPRETLEEGTSRDTECLLQDSSDIEAMEGHREADIDAEDMPNEWQDINLEELDALESNLLAEQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGRGLDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLNAHQTQLRIDSFFRLAQQEKQDAKLIKSHRLNRAVTCILRKEREEKAPELTKVTEALDDAKGKTQKRELPYKKETSVPKRRRPSGNGGFLGDPYCSESPQESSCEDGEGSSVMSARQRSAAESSKISCSDVPDLVRDPPHGRQGCVSTSSSSEDDEDKAKTVLVTARPVFGKKKLKLKSMKRRKKKT
name
type
misc_feature
link
xref
definition
note
: contig AC123800.4 55563..177367(1)
name
Ercc5 (ENSMUSG00000026048)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000050814
Vega_transcript:
OTTMUST00000050814
MGI_trans_name:
Ercc5-002
OTTT:
OTTMUST00000050814
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000131177
name
Ercc5 (ENSMUSG00000026048)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000075845
Vega_transcript:
OTTMUST00000075845
MGI_trans_name:
Ercc5-005
OTTT:
OTTMUST00000075845
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000139510
name
Ercc5 (ENSMUSG00000026048)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000075846
Vega_transcript:
OTTMUST00000075846
MGI_trans_name:
Ercc5-006
OTTT:
OTTMUST00000075846
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000145406
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.