VariantTable
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name
Col3a1 (ENSMUSG00000026043)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Col3a1
note
: collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
name
Col3a1 (ENSMUSG00000026043)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000087883
name
Col3a1 (ENSMUSG00000026043)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000186021
name
Col3a1 (ENSMUSG00000026043)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS35554.1
Uniprot/SWISSPROT:
P08121
RefSeq_peptide:
NP_034060
RefSeq_mRNA:
NM_009930.2
Vega_transcript:
Col3a1-001
Vega_transcript:
OTTMUST00000050577
Uniprot/SPTREMBL:
Q3TVI5
UCSC:uc007awq.2
Fantom:
3200002K15
Fantom:
B130020O11
Fantom:
I420049G23
EMBL:
AK019448
EMBL:
AK157762
EMBL:
AK160107
EMBL:
BC043089
EMBL:
BC058724
EMBL:
CH466589
EMBL:
K03037
EMBL:
M18933
EMBL:
X52046
EMBL:
X57983
GO:
GO:0001501
GO:
GO:0001568
GO:
GO:0005178
GO:
GO:0005201
GO:
GO:0005578
GO:
GO:0005581
GO:
GO:0005586
GO:
GO:0005615
GO:
GO:0005615
GO:
GO:0007160
GO:
GO:0007160
GO:
GO:0007179
GO:
GO:0007179
GO:
GO:0007229
GO:
GO:0007229
GO:
GO:0007507
GO:
GO:0007507
GO:
GO:0007568
GO:
GO:0009314
GO:
GO:0009314
GO:
GO:0009612
GO:
GO:0018149
GO:
GO:0018149
GO:
GO:0021987
GO:
GO:0030199
GO:
GO:0031012
GO:
GO:0031012
GO:
GO:0031012
GO:
GO:0034097
GO:
GO:0034097
GO:
GO:0035025
GO:
GO:0042060
GO:
GO:0042060
GO:
GO:0043206
GO:
GO:0043206
GO:
GO:0043588
GO:
GO:0043588
GO:
GO:0046332
GO:
GO:0046872
GO:
GO:0048407
GO:
GO:0048407
GO:
GO:0048565
GO:
GO:0050777
GO:
GO:0050777
GO:
GO:0060414
GO:
GO:0071230
GO:
GO:2001223
MGI_trans_name:
Col3a1-001
Vega_translation:
179197
Vega_translation:
OTTMUSP00000023637
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005578
goslim_goa:
GO:0005615
goslim_goa:
GO:0006464
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0030198
goslim_goa:
GO:0043167
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
protein_id:
AAA37338.1
protein_id:
AAH43089.1
protein_id:
AAH58724.1
protein_id:
BAB31724.1
protein_id:
BAE34185.1
protein_id:
BAE35633.1
protein_id:
CAA36279.1
protein_id:
CAA41048.1
protein_id:
EDK96880.1
OTTP:
OTTMUSP00000023637
OTTT:
OTTMUST00000050577
Reactome:
R-MMU-1266738
Reactome:
R-MMU-1442490
Reactome:
R-MMU-1474228
Reactome:
R-MMU-1474244
Reactome:
R-MMU-1474290
Reactome:
R-MMU-162582
Reactome:
R-MMU-1650814
Reactome:
R-MMU-186797
Reactome:
R-MMU-2022090
Reactome:
R-MMU-216083
Reactome:
R-MMU-2173782
Reactome:
R-MMU-3000170
Reactome:
R-MMU-3000171
Reactome:
R-MMU-3000178
Reactome:
R-MMU-3000480
Reactome:
R-MMU-375165
Reactome:
R-MMU-419037
Reactome:
R-MMU-422475
Reactome:
R-MMU-5653656
UniParc:
UPI00000295D6
definition
note
: transcript_id=ENSMUST00000087883
protein_id
: ENSMUSP00000085192
translation
: MMSFVQSGTWFLLTLLHPTLILAQQSNVDELGCSHLGQSYESRDVWKPEPCQICVCDSGSVLCDDIICDEEPLDCPNPEIPFGECCAICPQPSTPAPVLPDGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGLPGPPGSPGICESCPTGGQNYSPQFDSYDVKSGVGGMGGYPGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGALGPAGPAGKDGESGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLIGARGPPGPAGTNGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPPGPQGLQGIPGTGGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPGPAGQPGDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGPAGPTGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSGAPGKDGPPGPAGNSGSPGNPGIAGPKGDAGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGLAGPPGMPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSGAPGPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKSGGFSPYYGDDPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVCFL
name
Col3a1 (ENSMUSG00000026043)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Col3a1-007
Vega_transcript:
OTTMUST00000121027
Uniprot/SPTREMBL:
A0A087WPJ5
EMBL:
AC125167
GO:
GO:0001568
GO:
GO:0005178
GO:
GO:0005201
GO:
GO:0005578
GO:
GO:0005581
GO:
GO:0005586
GO:
GO:0005615
GO:
GO:0007160
GO:
GO:0007179
GO:
GO:0007229
GO:
GO:0007507
GO:
GO:0009314
GO:
GO:0018149
GO:
GO:0030199
GO:
GO:0031012
GO:
GO:0034097
GO:
GO:0042060
GO:
GO:0043206
GO:
GO:0043588
GO:
GO:0046332
GO:
GO:0048407
GO:
GO:0048565
GO:
GO:0050777
GO:
GO:0071230
MGI_trans_name:
Col3a1-007
Vega_translation:
179199
Vega_translation:
OTTMUSP00000066828
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005578
goslim_goa:
GO:0005615
goslim_goa:
GO:0006464
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030198
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000066828
OTTT:
OTTMUST00000121027
UniParc:
UPI0004620EC5
definition
note
: transcript_id=ENSMUST00000186021
protein_id
: ENSMUSP00000139802
translation
: PTGSSGPAGPPGPQGVKGERGSPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKSGGFSPYYGDDPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLSSRASQNITYHCKNSIAYMD
name
type
misc_feature
link
xref
definition
note
: contig AC125167.4 59450..167342(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.