VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Ninj1 (ENSMUSG00000037966)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ninj1
note
: ninjurin 1 [Source:MGI Symbol;Acc:MGI:1196617]
name
Ninj1 (ENSMUSG00000037966)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000049022
name
Ninj1 (ENSMUSG00000037966)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000120733
name
Ninj1 (ENSMUSG00000037966)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000131280
name
Ninj1 (ENSMUSG00000037966)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26497.1
Uniprot/SWISSPROT:
O70131
RefSeq_peptide:
NP_038638
RefSeq_mRNA:
NM_013610.2
Vega_transcript:
Ninj1-001
Vega_transcript:
OTTMUST00000068647
Uniprot/SPTREMBL:
Q3TXT8
UCSC:uc007qiw.1
Fantom:
F730215A18
Fantom:
F830023C24
Fantom:
I420002A10
Fantom:
I420045F12
EMBL:
AF219626
EMBL:
AK155741
EMBL:
AK159111
EMBL:
AK160045
EMBL:
AK171973
EMBL:
BC118937
EMBL:
U91513
GO:
GO:0001954
GO:
GO:0005515
GO:
GO:0007155
GO:
GO:0016021
GO:
GO:0042246
GO:
GO:1990384
MGI_trans_name:
Ninj1-001
Vega_translation:
214436
Vega_translation:
OTTMUSP00000034751
goslim_goa:
GO:0005575
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0040007
goslim_goa:
GO:0048856
protein_id:
AAC14594.1
protein_id:
AAG32161.1
protein_id:
AAI18938.1
protein_id:
BAE33409.1
protein_id:
BAE34827.1
protein_id:
BAE35587.1
protein_id:
BAE42754.1
OTTP:
OTTMUSP00000034751
OTTT:
OTTMUST00000068647
UniParc:
UPI0000026DA8
definition
note
: transcript_id=ENSMUST00000049022
protein_id
: ENSMUSP00000036740
translation
: MESGTEEYELNGDLRPGSPGSPDALPPRWGLRNRPINVNHYANKKSAAESMLDIALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPVMDVAPRQ
name
Ninj1 (ENSMUSG00000037966)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Ninj1-002
Vega_transcript:
OTTMUST00000068648
Uniprot/SPTREMBL:
D3YW25
UCSC:uc007qiw.1
EMBL:
AC140284
EMBL:
CH466546
GO:
GO:0001954
GO:
GO:0007155
GO:
GO:0016021
GO:
GO:0042246
GO:
GO:1990384
MGI_trans_name:
Ninj1-002
Vega_translation:
214437
Vega_translation:
OTTMUSP00000034752
goslim_goa:
GO:0005575
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0040007
goslim_goa:
GO:0048856
protein_id:
EDL41061.1
OTTP:
OTTMUSP00000034752
OTTT:
OTTMUST00000068648
UniParc:
UPI00001E7E4F
definition
note
: transcript_id=ENSMUST00000120733
protein_id
: ENSMUSP00000114130
translation
: MESGTEEYELNGDLRPGSPGSPDALVTGTSLEEFPSMIRQLVRPTGLPDLWLSGPDTLGSILLCIPGEAYGAVTSMAQDQTLEPPRWGLRNRPINVNHYANKKSAAESMLDIALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPVMDVAPRQ
name
Ninj1 (ENSMUSG00000037966)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Ninj1-005
Vega_transcript:
OTTMUST00000068651
Uniprot/SPTREMBL:
D6RFN5
UCSC:uc007qiw.1
EMBL:
AC140284
GO:
GO:0001954
GO:
GO:0007155
GO:
GO:0016021
GO:
GO:0042246
GO:
GO:1990384
MGI_trans_name:
Ninj1-005
Vega_translation:
214438
Vega_translation:
OTTMUSP00000034753
goslim_goa:
GO:0005575
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
goslim_goa:
GO:0040007
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000034753
OTTT:
OTTMUST00000068651
UniParc:
UPI0000484485
definition
note
: transcript_id=ENSMUST00000131280
protein_id
: ENSMUSP00000121186
translation
: MESGTEEYELNGDLRPGSPGSPDALPPRWGLRNRPINVNHYANKKSAAESMLDIALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLATSTQARLP
name
type
misc_feature
link
xref
definition
note
: contig AC140284.3 45990..186444(1)
name
Ninj1 (ENSMUSG00000037966)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000068649
Vega_transcript:
OTTMUST00000068649
MGI_trans_name:
Ninj1-003
OTTT:
OTTMUST00000068649
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000150555
name
Ninj1 (ENSMUSG00000037966)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000068650
Vega_transcript:
OTTMUST00000068650
MGI_trans_name:
Ninj1-004
OTTT:
OTTMUST00000068650
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000153819
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.