VariantTable
SequenceCutter
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Updated genome
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BAC clone ordering.
cursor point :
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On read coverage region : Click to browse alignment view.
name
Syk (ENSMUSG00000021457)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Syk
note
: spleen tyrosine kinase [Source:MGI Symbol;Acc:MGI:99515]
name
Syk (ENSMUSG00000021457)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000120135
name
Syk (ENSMUSG00000021457)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000118756
name
Syk (ENSMUSG00000021457)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000055087
name
Syk (ENSMUSG00000021457)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26517.1
Uniprot/SWISSPROT:
P48025
RefSeq_peptide:
NP_001185906
RefSeq_mRNA:
NM_001198977.1
RefSeq_peptide_predicted:
XP_006516958.1
RefSeq_peptide_predicted:
XP_006516959.1
RefSeq_peptide_predicted:
XP_006516960.1
Vega_transcript:
OTTMUST00000078613
Vega_transcript:
Syk-001
Uniprot/SPTREMBL:
Q3UPF7
UCSC:uc007qmz.1
Fantom:
8430401I19
Fantom:
F420003H05
EMBL:
AK136363
EMBL:
AK143564
EMBL:
CH466546
EMBL:
U25685
EMBL:
U36776
EMBL:
Z49877
GO:
GO:0000187
GO:
GO:0001525
GO:
GO:0001820
GO:
GO:0001945
GO:
GO:0002092
GO:
GO:0002250
GO:
GO:0002281
GO:
GO:0002283
GO:
GO:0002366
GO:
GO:0002554
GO:
GO:0004672
GO:
GO:0004674
GO:
GO:0004674
GO:
GO:0004713
GO:
GO:0004715
GO:
GO:0004716
GO:
GO:0005102
GO:
GO:0005178
GO:
GO:0005178
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005829
GO:
GO:0006468
GO:
GO:0007159
GO:
GO:0007159
GO:
GO:0007166
GO:
GO:0007167
GO:
GO:0007169
GO:
GO:0007186
GO:
GO:0007229
GO:
GO:0007257
GO:
GO:0010543
GO:
GO:0010803
GO:
GO:0010803
GO:
GO:0016477
GO:
GO:0018105
GO:
GO:0018108
GO:
GO:0019370
GO:
GO:0019815
GO:
GO:0019901
GO:
GO:0030154
GO:
GO:0030593
GO:
GO:0030593
GO:
GO:0031234
GO:
GO:0032009
GO:
GO:0032481
GO:
GO:0032928
GO:
GO:0033630
GO:
GO:0035556
GO:
GO:0038083
GO:
GO:0042101
GO:
GO:0042101
GO:
GO:0042742
GO:
GO:0042991
GO:
GO:0042991
GO:
GO:0043234
GO:
GO:0043234
GO:
GO:0043306
GO:
GO:0043313
GO:
GO:0043366
GO:
GO:0045087
GO:
GO:0045401
GO:
GO:0045425
GO:
GO:0045579
GO:
GO:0045579
GO:
GO:0045588
GO:
GO:0045780
GO:
GO:0046638
GO:
GO:0046641
GO:
GO:0046777
GO:
GO:0048514
GO:
GO:0050715
GO:
GO:0050731
GO:
GO:0050764
GO:
GO:0050850
GO:
GO:0050853
GO:
GO:0051090
GO:
GO:0051090
GO:
GO:0070372
GO:
GO:0071226
GO:
GO:0090237
GO:
GO:0090330
MGI_trans_name:
Syk-001
PDB:
2LCT
PDB:
2MC1
Vega_translation:
214464
Vega_translation:
OTTMUSP00000041830
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0005886
goslim_goa:
GO:0006464
goslim_goa:
GO:0006605
goslim_goa:
GO:0006629
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0016301
goslim_goa:
GO:0019899
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0044281
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAA79996.1
protein_id:
AAA87462.1
protein_id:
BAE22946.1
protein_id:
BAE25438.1
protein_id:
CAA90034.1
protein_id:
EDL41113.1
protein_id:
EDL41114.1
protein_id:
EDL41115.1
OTTP:
OTTMUSP00000041830
OTTT:
OTTMUST00000078613
Reactome:
R-MMU-109582
Reactome:
R-MMU-114604
Reactome:
R-MMU-1280215
Reactome:
R-MMU-1280218
Reactome:
R-MMU-162582
Reactome:
R-MMU-168249
Reactome:
R-MMU-168256
Reactome:
R-MMU-2029480
Reactome:
R-MMU-2029481
Reactome:
R-MMU-2029482
Reactome:
R-MMU-2029485
Reactome:
R-MMU-2172127
Reactome:
R-MMU-2424491
Reactome:
R-MMU-2454202
Reactome:
R-MMU-2730905
Reactome:
R-MMU-2871796
Reactome:
R-MMU-2871809
Reactome:
R-MMU-354192
Reactome:
R-MMU-449147
Reactome:
R-MMU-451927
Reactome:
R-MMU-5607764
Reactome:
R-MMU-5621480
Reactome:
R-MMU-5621481
Reactome:
R-MMU-76002
Reactome:
R-MMU-76009
Reactome:
R-MMU-983695
Reactome:
R-MMU-983705
UniParc:
UPI0000021BFB
definition
note
: transcript_id=ENSMUST00000120135
protein_id
: ENSMUSP00000113852
translation
: MAGSAVDSANHLTYFFGNITREEAEDYLVQGGMTDGLYLLRQSRNYLGGFALSVAHNRKAHHYTIERELNGTYAISGGRAHASPADLCHYHSQEPDGLICLLKKPFNRPPGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGNISRDESEQTVLIGSKTNGKFLIRARDNSGSYALCLLHEGKVLHYRIDRDKTGKLSIPEGKKFDTLWQLVEHYSYKPDGLLRVLTVPCQKIGAQMGHPGSPNAHPVTWSPGGIISRIKSYSFPKPGHKKPAPPQGSRPESTVSFNPYEPTGGPWGPDRGLQREALPMDTEVYESPYADPEEIRPKEVYLDRSLLTLEDNELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHIKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFTAVELRLRNYYYDVVN
name
Syk (ENSMUSG00000021457)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000078615
Vega_transcript:
Syk-003
Uniprot/SPTREMBL:
E9PWE9
UCSC:uc007qmy.1
EMBL:
AC159192
EMBL:
AC160765
GO:
GO:0000187
GO:
GO:0001820
GO:
GO:0002250
GO:
GO:0004672
GO:
GO:0004674
GO:
GO:0004713
GO:
GO:0004715
GO:
GO:0004716
GO:
GO:0005102
GO:
GO:0005178
GO:
GO:0005515
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0006468
GO:
GO:0007159
GO:
GO:0007166
GO:
GO:0007167
GO:
GO:0007169
GO:
GO:0007186
GO:
GO:0007257
GO:
GO:0010803
GO:
GO:0016477
GO:
GO:0018105
GO:
GO:0018108
GO:
GO:0019370
GO:
GO:0019815
GO:
GO:0030154
GO:
GO:0030593
GO:
GO:0031234
GO:
GO:0035556
GO:
GO:0038083
GO:
GO:0042101
GO:
GO:0042991
GO:
GO:0043234
GO:
GO:0043306
GO:
GO:0043366
GO:
GO:0045401
GO:
GO:0045425
GO:
GO:0045579
GO:
GO:0045588
GO:
GO:0046638
GO:
GO:0046641
GO:
GO:0046777
GO:
GO:0050715
GO:
GO:0050731
GO:
GO:0050850
GO:
GO:0050853
GO:
GO:0051090
MGI_trans_name:
Syk-003
Vega_translation:
214466
Vega_translation:
OTTMUSP00000041832
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0006464
goslim_goa:
GO:0006605
goslim_goa:
GO:0006629
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016301
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0044281
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
OTTP:
OTTMUSP00000041832
OTTT:
OTTMUST00000078615
UniParc:
UPI000173A8C5
definition
note
: transcript_id=ENSMUST00000118756
protein_id
: ENSMUSP00000112914
translation
: MAGSAVDSANHLTYFFGNITREEAEDYLVQGGMTDGLYLLRQSRNYLGGFALSVAHNRKAHHYTIERELNGTYAISGGRAHASPADLCHYHSQEPDGLICLLKKPFNRPPGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGNISRDESEQTVLIGSKTNGKFLIRARDNSGSYALCLLHEGKVLHYRIDRDKTGKLSIPEGKKFDTLWQLVEHYSYKPDGLLRVLTVPCQKIGAQMGHPGSPNAHPVPAPPQGSRPESTVSFNPYEPTGGPWGPDRGLQREALPMDTEVYESPYADPEEIRPKEVYLDRSLLTLEDNELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHIKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYE
name
Syk (ENSMUSG00000021457)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26517.1
Uniprot/SWISSPROT:
P48025
RefSeq_peptide:
NP_035648
RefSeq_mRNA:
NM_011518.2
RefSeq_peptide_predicted:
XP_006516958.1
RefSeq_peptide_predicted:
XP_006516959.1
RefSeq_peptide_predicted:
XP_006516960.1
Vega_transcript:
OTTMUST00000078614
Vega_transcript:
Syk-002
Uniprot/SPTREMBL:
Q3UPF7
UCSC:uc007qna.1
Fantom:
8430401I19
Fantom:
F420003H05
EMBL:
AK136363
EMBL:
AK143564
EMBL:
CH466546
EMBL:
U25685
EMBL:
U36776
EMBL:
Z49877
GO:
GO:0000187
GO:
GO:0001525
GO:
GO:0001820
GO:
GO:0001945
GO:
GO:0002092
GO:
GO:0002250
GO:
GO:0002281
GO:
GO:0002283
GO:
GO:0002366
GO:
GO:0002554
GO:
GO:0004672
GO:
GO:0004674
GO:
GO:0004713
GO:
GO:0004715
GO:
GO:0004716
GO:
GO:0005102
GO:
GO:0005178
GO:
GO:0005515
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005829
GO:
GO:0006468
GO:
GO:0007159
GO:
GO:0007166
GO:
GO:0007167
GO:
GO:0007169
GO:
GO:0007186
GO:
GO:0007229
GO:
GO:0007257
GO:
GO:0010543
GO:
GO:0010803
GO:
GO:0016477
GO:
GO:0018105
GO:
GO:0018108
GO:
GO:0019370
GO:
GO:0019815
GO:
GO:0019901
GO:
GO:0030154
GO:
GO:0030593
GO:
GO:0031234
GO:
GO:0032009
GO:
GO:0032481
GO:
GO:0032928
GO:
GO:0033630
GO:
GO:0035556
GO:
GO:0038083
GO:
GO:0042101
GO:
GO:0042742
GO:
GO:0042991
GO:
GO:0043234
GO:
GO:0043306
GO:
GO:0043313
GO:
GO:0043366
GO:
GO:0045087
GO:
GO:0045401
GO:
GO:0045425
GO:
GO:0045579
GO:
GO:0045588
GO:
GO:0045780
GO:
GO:0046638
GO:
GO:0046641
GO:
GO:0046777
GO:
GO:0048514
GO:
GO:0050715
GO:
GO:0050731
GO:
GO:0050764
GO:
GO:0050850
GO:
GO:0050853
GO:
GO:0051090
GO:
GO:0070372
GO:
GO:0071226
GO:
GO:0090237
GO:
GO:0090330
MGI_trans_name:
Syk-002
PDB:
2LCT
PDB:
2MC1
Vega_translation:
214465
Vega_translation:
OTTMUSP00000041831
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0005886
goslim_goa:
GO:0006464
goslim_goa:
GO:0006605
goslim_goa:
GO:0006629
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0016301
goslim_goa:
GO:0019899
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0044281
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAA79996.1
protein_id:
AAA87462.1
protein_id:
BAE22946.1
protein_id:
BAE25438.1
protein_id:
CAA90034.1
protein_id:
EDL41113.1
protein_id:
EDL41114.1
protein_id:
EDL41115.1
OTTP:
OTTMUSP00000041831
OTTT:
OTTMUST00000078614
Reactome:
R-MMU-109582
Reactome:
R-MMU-114604
Reactome:
R-MMU-1280215
Reactome:
R-MMU-1280218
Reactome:
R-MMU-162582
Reactome:
R-MMU-168249
Reactome:
R-MMU-168256
Reactome:
R-MMU-2029480
Reactome:
R-MMU-2029481
Reactome:
R-MMU-2029482
Reactome:
R-MMU-2029485
Reactome:
R-MMU-2172127
Reactome:
R-MMU-2424491
Reactome:
R-MMU-2454202
Reactome:
R-MMU-2730905
Reactome:
R-MMU-2871796
Reactome:
R-MMU-2871809
Reactome:
R-MMU-354192
Reactome:
R-MMU-449147
Reactome:
R-MMU-451927
Reactome:
R-MMU-5607764
Reactome:
R-MMU-5621480
Reactome:
R-MMU-5621481
Reactome:
R-MMU-76002
Reactome:
R-MMU-76009
Reactome:
R-MMU-983695
Reactome:
R-MMU-983705
UniParc:
UPI0000021BFB
definition
note
: transcript_id=ENSMUST00000055087
protein_id
: ENSMUSP00000060828
translation
: MAGSAVDSANHLTYFFGNITREEAEDYLVQGGMTDGLYLLRQSRNYLGGFALSVAHNRKAHHYTIERELNGTYAISGGRAHASPADLCHYHSQEPDGLICLLKKPFNRPPGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGNISRDESEQTVLIGSKTNGKFLIRARDNSGSYALCLLHEGKVLHYRIDRDKTGKLSIPEGKKFDTLWQLVEHYSYKPDGLLRVLTVPCQKIGAQMGHPGSPNAHPVTWSPGGIISRIKSYSFPKPGHKKPAPPQGSRPESTVSFNPYEPTGGPWGPDRGLQREALPMDTEVYESPYADPEEIRPKEVYLDRSLLTLEDNELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHIKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFTAVELRLRNYYYDVVN
name
type
misc_feature
link
xref
definition
note
: contig AC159192.2 1..127764(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.