VariantTable
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On read coverage region : Click to browse alignment view.
name
Ctnna2 (ENSMUSG00000063063)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ctnna2
note
: catenin (cadherin associated protein), alpha 2 [Source:MGI Symbol;Acc:MGI:88275]
name
RP23-178I17.1 (ENSMUSG00000108077)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: RP23-178I17.1
name
Ctnna2 (ENSMUSG00000063063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000161846
name
Ctnna2 (ENSMUSG00000063063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000160894
name
Ctnna2 (ENSMUSG00000063063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000159626
name
Ctnna2 (ENSMUSG00000063063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000075340
name
Ctnna2 (ENSMUSG00000063063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q61301
RefSeq_mRNA_predicted:
XM_011241194.1
RefSeq_peptide_predicted:
XP_011239496.1
Vega_transcript:
Ctnna2-001
Vega_transcript:
OTTMUST00000087608
UCSC:uc012enl.1
Fantom:
K530006G14
EMBL:
AK158916
EMBL:
BC079648
EMBL:
D25281
EMBL:
D25282
GO:
GO:0005198
GO:
GO:0005737
GO:
GO:0005912
GO:
GO:0005913
GO:
GO:0007409
GO:
GO:0015629
GO:
GO:0016323
GO:
GO:0016337
GO:
GO:0021942
GO:
GO:0030027
GO:
GO:0030424
GO:
GO:0045296
GO:
GO:0048813
GO:
GO:0048854
GO:
GO:0051015
GO:
GO:0051823
GO:
GO:0060134
GO:
GO:0097481
MGI_trans_name:
Ctnna2-001
PDB:
4K1O
PDB:
4ONS
PDB:
4P9T
Vega_translation:
197853
Vega_translation:
OTTMUSP00000047676
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
goslim_goa:
GO:0050877
protein_id:
AAH79648.1
protein_id:
BAA04969.1
protein_id:
BAA04970.1
protein_id:
BAE34726.1
OTTP:
OTTMUSP00000047676
OTTT:
OTTMUST00000087608
Reactome:
R-MMU-1266738
Reactome:
R-MMU-375170
Reactome:
R-MMU-525793
UniParc:
UPI0001B30106
definition
note
: transcript_id=ENSMUST00000161846
protein_id
: ENSMUSP00000123714
translation
: MTDIHSSYTYTGSMTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAVLMIRTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDSF
name
Ctnna2 (ENSMUSG00000063063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide_predicted:
XP_011239497.1
Vega_transcript:
Ctnna2-002
Vega_transcript:
OTTMUST00000087609
Uniprot/SPTREMBL:
E0CXB9
UCSC:uc009cjq.2
EMBL:
AC116787
EMBL:
AC118610
EMBL:
AC121356
EMBL:
AC130220
EMBL:
AC152957
EMBL:
AC153997
EMBL:
AC154000
EMBL:
AC155840
GO:
GO:0005198
GO:
GO:0005737
GO:
GO:0005912
GO:
GO:0005913
GO:
GO:0007155
GO:
GO:0015629
GO:
GO:0016323
GO:
GO:0030027
GO:
GO:0045296
GO:
GO:0048854
GO:
GO:0051015
GO:
GO:0097481
MGI_trans_name:
Ctnna2-002
Vega_translation:
197854
Vega_translation:
OTTMUSP00000047677
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000047677
OTTT:
OTTMUST00000087609
UniParc:
UPI0001DD369D
definition
note
: transcript_id=ENSMUST00000160894
protein_id
: ENSMUSP00000124764
translation
: MTDIHSSYTYTGSMTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAVLMIRTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQSTFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDSF
name
Ctnna2 (ENSMUSG00000063063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS20250.1
Uniprot/SWISSPROT:
Q61301
RefSeq_peptide:
NP_001103234
RefSeq_peptide:
NP_033949
RefSeq_mRNA:
NM_001109764.1
RefSeq_mRNA:
NM_009819.2
RefSeq_mRNA_predicted:
XM_006505454
Vega_transcript:
Ctnna2-003
Vega_transcript:
OTTMUST00000087610
UCSC:uc012enm.1
Fantom:
K530006G14
EMBL:
AK158916
EMBL:
BC079648
EMBL:
D25281
EMBL:
D25282
GO:
GO:0005198
GO:
GO:0005515
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0005912
GO:
GO:0005913
GO:
GO:0007409
GO:
GO:0015629
GO:
GO:0016323
GO:
GO:0016337
GO:
GO:0021942
GO:
GO:0030027
GO:
GO:0030424
GO:
GO:0045296
GO:
GO:0048813
GO:
GO:0048854
GO:
GO:0051015
GO:
GO:0051823
GO:
GO:0060134
GO:
GO:0097481
MGI_trans_name:
Ctnna2-003
PDB:
4K1O
PDB:
4ONS
PDB:
4P9T
Vega_translation:
197855
Vega_translation:
OTTMUSP00000047678
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
goslim_goa:
GO:0050877
protein_id:
AAH79648.1
protein_id:
BAA04969.1
protein_id:
BAA04970.1
protein_id:
BAE34726.1
OTTP:
OTTMUSP00000047678
OTTT:
OTTMUST00000087610
Reactome:
R-MMU-1266738
Reactome:
R-MMU-375170
Reactome:
R-MMU-525793
UniParc:
UPI000002337F
definition
note
: transcript_id=ENSMUST00000159626
protein_id
: ENSMUSP00000124376
translation
: MTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAVLMIRTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQSTFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDSF
name
Ctnna2 (ENSMUSG00000063063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS39521.1
Uniprot/SWISSPROT:
Q61301
RefSeq_peptide:
NP_663785
RefSeq_mRNA:
NM_145732.2
RefSeq_mRNA_predicted:
XM_006505455
UCSC:uc012enl.1
Fantom:
K530006G14
EMBL:
AK158916
EMBL:
BC079648
EMBL:
D25281
EMBL:
D25282
GO:
GO:0005198
GO:
GO:0005737
GO:
GO:0005912
GO:
GO:0005913
GO:
GO:0007409
GO:
GO:0015629
GO:
GO:0016323
GO:
GO:0016337
GO:
GO:0021942
GO:
GO:0030027
GO:
GO:0030424
GO:
GO:0045296
GO:
GO:0048813
GO:
GO:0048854
GO:
GO:0051015
GO:
GO:0051823
GO:
GO:0060134
GO:
GO:0097481
MGI_trans_name:
Ctnna2-201
PDB:
4K1O
PDB:
4ONS
PDB:
4P9T
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
goslim_goa:
GO:0050877
protein_id:
AAH79648.1
protein_id:
BAA04969.1
protein_id:
BAA04970.1
protein_id:
BAE34726.1
Reactome:
R-MMU-1266738
Reactome:
R-MMU-375170
Reactome:
R-MMU-525793
UniParc:
UPI0000217FC7
definition
note
: transcript_id=ENSMUST00000075340
protein_id
: ENSMUSP00000074809
translation
: MTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAVLMIRTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDSF
name
type
misc_feature
link
xref
definition
note
: contig AC118610.9 1..216889(-1)
name
RP23-178I17.1 (ENSMUSG00000108077)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
RefSeq_ncRNA:NR_045141
Vega_transcript:
OTTMUST00000141143
Vega_transcript:
OTTMUST00000141143
Clone_based_vega_transcript:RP23-178I17.1-001
OTTT:
OTTMUST00000141143
definition
note
: TEC
note
: transcript_id=ENSMUST00000204215
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.