VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Ttc7 (ENSMUSG00000036918)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ttc7
note
: tetratricopeptide repeat domain 7 [Source:MGI Symbol;Acc:MGI:1920999]
name
Ttc7 (ENSMUSG00000036918)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000041110
name
Ttc7 (ENSMUSG00000036918)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000125875
name
Ttc7 (ENSMUSG00000036918)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000144204
name
Ttc7 (ENSMUSG00000036918)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000154255
name
Ttc7 (ENSMUSG00000036918)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS29016.1
Uniprot/SWISSPROT:
Q8BGB2
RefSeq_peptide:
NP_082915
RefSeq_mRNA:
NM_028639.3
Vega_transcript:
OTTMUST00000070689
Vega_transcript:
Ttc7-001
UCSC:uc008duv.2
Fantom:
A430107H07
Fantom:
A630025E21
Fantom:
C730031I03
EMBL:
AK040578
EMBL:
AK050263
EMBL:
AK080284
EMBL:
BC042512
GO:
GO:0005623
GO:
GO:0006879
GO:
GO:0030097
MGI_trans_name:
Ttc7-001
Vega_translation:
221114
Vega_translation:
OTTMUSP00000036065
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0008150
goslim_goa:
GO:0042592
goslim_goa:
GO:0048856
protein_id:
AAH42512.2
protein_id:
BAC30634.1
protein_id:
BAC34153.1
protein_id:
BAC37865.1
OTTP:
OTTMUSP00000036065
OTTT:
OTTMUST00000070689
UniParc:
UPI00000EBA2D
definition
note
: transcript_id=ENSMUST00000041110
protein_id
: ENSMUSP00000040771
translation
: MAAKGAHGTHLKVESEVERCRAEGQWDRMFELARHLQMLGISGGGSSNRRNSPSGRFTTLDTDDFVKLLLAEALLEQCLKDNHDKIKNSIPLLEKTDHRLNEAKDHLSSLLNNGKLPPQYMCEAMLILGKLHYVEGSYRDAVSMYARAGIDDISVENKPLYQMRLLSEAFVIKGLSLERLPNSVASHIRLTEREEEVVACFERASWVAQVFLQELEKTSNNSTSRHLKGSLSPDYELSYFLEAALQSAYVKNLKKGNIVKGMRELREILRTVETKATQNFKVVAAKHLAGVLLHSLSEDCYWSPLSHPLPEFMNKEENSFVTQTLRKPHLYEGDNLYCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQYVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVPLMAAKVCIGSLHWLEEAEHFATVVIGLGEEAGESLPKGYLALGLTYSLQATDATLKSKQDELHRKALQTLERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTMCRDDANALHLLALLFSAQKYYQHALDVINMAITEHPENFNLMFTKVKLEQVLKGPEEALVTCRQMLRLWQTLYNFSQLGGLEKDGSFEGLTVKKQNGIHLTLPDAHDADSGSRRASSIAASRLEEAMSELTLTTSVLKQGPMQLWTTLEQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDGVRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTFHEAWQGLGEVLQDQGQNEAAVDCFLTALELEASSPVLPFSIIAREL
name
Ttc7 (ENSMUSG00000036918)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000070690
Vega_transcript:
Ttc7-002
Uniprot/SPTREMBL:
D3Z0R8
UCSC:uc008duu.1
EMBL:
AC084383
GO:
GO:0005623
GO:
GO:0006879
GO:
GO:0030097
MGI_trans_name:
Ttc7-002
Vega_translation:
221115
Vega_translation:
OTTMUSP00000036066
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0008150
goslim_goa:
GO:0042592
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000036066
OTTT:
OTTMUST00000070690
UniParc:
UPI0001611678
definition
note
: transcript_id=ENSMUST00000125875
protein_id
: ENSMUSP00000115351
translation
: MAAKGAHGTHLKVESEVERCRAEGQWDRMFELARHLQMLGISGGGSSNRRNSPSGRFTTLDTDDFVKLLLAEALLEQCLKDNHDKIKNSIPLLEKTDHRLNEAKDHLSSLLNNGKLPPQYMCEAMLILGKLHYVEGSYRDAVSMYARAGIDDISVENKPLYQMRLLSEAFVIKGLSLERLPNSVASHIRLTEREEEVVACFERASWVAQVFLQELEKTSNNSTSRHLKGSLSPDYELSYFLEAALQSAYVKNLKKGNIVKGMRELREILRTVETKATQNFKVVAAKHLAGVLLHSLSEDCYWSPLSHPLPEFMNKEENSFVTQTLRKPHLYEGDNLYCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQYVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVPLMAAKVCIGSLHWLEEAEHFATVVIGLGEEAGESLPKGYLALGLTYSLQATDATLKSKQDELHRKALQTLERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTMCRDDANALHLLALLFSAQKYYQHALDVINMAITEHPENFNLMFTKVKLEQVLKGPEEALVTCRQMLRLWQTLYNFSQLGGLEKDGSFEGLTVKKQNGIHLTLPDAHDADSGSRRASSIAASRLEEAMSELTLTTSVLKQGPMQLWTTLEQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDGVRIMHSLVSHSPLPRPPFSSPSPRQVPAAAAADDDDVDDASGHL
name
Ttc7 (ENSMUSG00000036918)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000071095
Vega_transcript:
Ttc7-008
Uniprot/SPTREMBL:
D6RG81
EMBL:
AC084383
GO:
GO:0005623
GO:
GO:0006879
GO:
GO:0030097
MGI_trans_name:
Ttc7-008
Vega_translation:
221116
Vega_translation:
OTTMUSP00000036356
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0008150
goslim_goa:
GO:0042592
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000036356
OTTT:
OTTMUST00000071095
UniParc:
UPI000161167A
definition
note
: transcript_id=ENSMUST00000144204
protein_id
: ENSMUSP00000122563
translation
: MAAKGAHGTHLKVESEVERCRAEGQWDRMFELARHLQMLGISGGGSSNRRNSPSGRFTTLDTDDFVKLLLAEALLEQCLKDNHDKIKNSIPLLEKTDHRLNEAKDHLSSLLNNGKLPPQYMCEAMLILGKLHYVEGSYRDAVSMYARAGIDDISVENKPLYQMRLLSEAFVIKACLQLLGGTQSWWSEVLPGRPLPGTPAQLRRLPHPPD
name
Ttc7 (ENSMUSG00000036918)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000071096
Vega_transcript:
Ttc7-009
Uniprot/SPTREMBL:
F6ZVR4
EMBL:
AC084383
GO:
GO:0005623
GO:
GO:0006879
GO:
GO:0030097
MGI_trans_name:
Ttc7-009
Vega_translation:
221117
Vega_translation:
OTTMUSP00000036357
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0008150
goslim_goa:
GO:0042592
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000036357
OTTT:
OTTMUST00000071096
UniParc:
UPI0001611679
definition
note
: transcript_id=ENSMUST00000154255
protein_id
: ENSMUSP00000114181
translation
: PQYMCEAMLILGKLHYVEGSYRDAVSMYARAGIDDISVENKPLYQMRLLSEAFVIKACLQLLGGTQSWWSEVLPGRPLPGTPAQLRRLPHPPD
name
type
misc_feature
link
xref
definition
note
: contig AC084383.1 2623..203589(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.