VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Cldn17 (ENSMUSG00000055811)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Cldn17
note
: claudin 17 [Source:MGI Symbol;Acc:MGI:2652030]
name
Cldn17 (ENSMUSG00000055811)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000069549
name
Cldn17 (ENSMUSG00000055811)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS28295.1
Uniprot/SWISSPROT:
Q8BXA6
RefSeq_peptide:
NP_852467
RefSeq_mRNA:
NM_181490.3
Vega_transcript:
Cldn17-001
Vega_transcript:
OTTMUST00000047385
UCSC:uc007zuy.1
Fantom:
C130046K08
EMBL:
AK048287
GO:
GO:0003674
GO:
GO:0005198
GO:
GO:0005886
GO:
GO:0005886
GO:
GO:0005923
GO:
GO:0008150
GO:
GO:0016021
GO:
GO:0016338
GO:
GO:0042802
MGI_trans_name:
Cldn17-001
Vega_translation:
219007
Vega_translation:
OTTMUSP00000021399
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008150
protein_id:
BAC33296.1
OTTP:
OTTMUSP00000021399
OTTT:
OTTMUST00000047385
UniParc:
UPI00000EA6C7
definition
note
: transcript_id=ENSMUST00000069549
protein_id
: ENSMUSP00000066427
translation
: MAFYPLQIAGLVLGFFGLVGTIGTTLLPQWRVSAFIGSNIIIFERIWEGLWMNCIQQAMVTLQCKFYNSILALPPVLEAARALMCVAVALALVALIIGICGMKQLQCTGSSERVKAYLLGTSGVLFILTGIFVLIPVSWTANIIIRDFYDPTVHAGQKRELGGALFLGWATAAVLFIGGGLLCGYCCCNRKERWHRYPVPAYRVPQKDNQRNVTVPRKSSTSYV
name
type
misc_feature
link
xref
definition
note
: contig AC110241.17 68824..256720(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.