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name
Rpl7 (ENSMUSG00000043716)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Rpl7
note
: ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
name
Rpl7 (ENSMUSG00000043716)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000058437
name
Rpl7 (ENSMUSG00000043716)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14829.1
Uniprot/SWISSPROT:
P14148
RefSeq_peptide:
NP_035421
RefSeq_mRNA:
NM_011291.5
Vega_transcript:
OTTMUST00000041073
Vega_transcript:
Rpl7-001
Uniprot/SPTREMBL:
Q5M9N8
UCSC:uc007ajl.3
Fantom:
C920030B17
Fantom:
E430010G11
Fantom:
I730035E14
Fantom:
I730060E22
EMBL:
AK050656
EMBL:
AK088291
EMBL:
AK146219
EMBL:
AK168137
EMBL:
BC025909
EMBL:
BC051261
EMBL:
BC086786
EMBL:
BC096452
EMBL:
M29015
EMBL:
M29016
EMBL:
M85235
EMBL:
X57960
EMBL:
X57961
GO:
GO:0003677
GO:
GO:0003677
GO:
GO:0003729
GO:
GO:0003729
GO:
GO:0003735
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005730
GO:
GO:0005730
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0005844
GO:
GO:0005925
GO:
GO:0005925
GO:
GO:0006364
GO:
GO:0006364
GO:
GO:0006412
GO:
GO:0016020
GO:
GO:0016020
GO:
GO:0022625
GO:
GO:0022625
GO:
GO:0030529
GO:
GO:0030529
GO:
GO:0042273
GO:
GO:0042273
GO:
GO:0042803
GO:
GO:0042803
GO:
GO:0044822
GO:
GO:0044822
GO:
GO:0070062
GO:
GO:0070062
MGI_trans_name:
Rpl7-001
Vega_translation:
178757
Vega_translation:
OTTMUSP00000018402
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0003723
goslim_goa:
GO:0003729
goslim_goa:
GO:0003735
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005730
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0005840
goslim_goa:
GO:0006412
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0042254
goslim_goa:
GO:0043226
protein_id:
AAA40064.1
protein_id:
AAA40069.1
protein_id:
AAA40070.1
protein_id:
AAH25909.1
protein_id:
AAH51261.1
protein_id:
AAH86786.1
protein_id:
AAH96452.1
protein_id:
BAC34366.1
protein_id:
BAC40262.1
protein_id:
BAE26987.1
protein_id:
BAE40105.1
protein_id:
CAA41028.1
protein_id:
CAA41029.1
OTTP:
OTTMUSP00000018402
OTTT:
OTTMUST00000041073
Reactome:
R-MMU-156827
Reactome:
R-MMU-156842
Reactome:
R-MMU-156902
Reactome:
R-MMU-1799339
Reactome:
R-MMU-392499
Reactome:
R-MMU-72613
Reactome:
R-MMU-72689
Reactome:
R-MMU-72706
Reactome:
R-MMU-72737
Reactome:
R-MMU-72764
Reactome:
R-MMU-72766
Reactome:
R-MMU-74160
Reactome:
R-MMU-927802
Reactome:
R-MMU-975956
Reactome:
R-MMU-975957
UniParc:
UPI0000001A05
definition
note
: transcript_id=ENSMUST00000058437
protein_id
: ENSMUSP00000071616
translation
: MEAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
name
type
misc_feature
link
xref
definition
note
: contig AC162442.19 8380..201383(1)
name
Rpl7 (ENSMUSG00000043716)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000041074
Vega_transcript:
OTTMUST00000041074
MGI_trans_name:
Rpl7-002
OTTT:
OTTMUST00000041074
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000141217
name
Rpl7 (ENSMUSG00000043716)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000041076
Vega_transcript:
OTTMUST00000041076
MGI_trans_name:
Rpl7-004
OTTT:
OTTMUST00000041076
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000125005
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.