VariantTable
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BAC clone ordering.
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On read coverage region : Click to browse alignment view.
name
Pdcl3 (ENSMUSG00000026078)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pdcl3
note
: phosducin-like 3 [Source:MGI Symbol;Acc:MGI:1916083]
name
Pdcl3 (ENSMUSG00000026078)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027247
name
Pdcl3 (ENSMUSG00000026078)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000193489
name
Pdcl3 (ENSMUSG00000026078)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000194552
name
Pdcl3 (ENSMUSG00000026078)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14903.1
Uniprot/SWISSPROT:
Q8BVF2
RefSeq_peptide:
NP_081126
RefSeq_mRNA:
NM_026850.4
Vega_transcript:
OTTMUST00000127689
Vega_transcript:
Pdcl3-001
UCSC:uc007atc.1
Fantom:
1110061A19
Fantom:
6530423C24
Fantom:
I920028N15
EMBL:
AF110512
EMBL:
AK004334
EMBL:
AK078372
EMBL:
AK168509
EMBL:
BC005601
GO:
GO:0001525
GO:
GO:0001938
GO:
GO:0001938
GO:
GO:0005515
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0006457
GO:
GO:0006915
GO:
GO:0043184
GO:
GO:0044183
GO:
GO:0044183
GO:
GO:0045766
GO:
GO:0045766
GO:
GO:0050730
GO:
GO:0050730
GO:
GO:2000059
GO:
GO:2000059
MGI_trans_name:
Pdcl3-001
Vega_translation:
179083
Vega_translation:
OTTMUSP00000068845
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0008150
goslim_goa:
GO:0008219
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
AAG21888.1
protein_id:
AAH05601.1
protein_id:
BAB23267.1
protein_id:
BAC37242.1
protein_id:
BAE40392.1
OTTP:
OTTMUSP00000068845
OTTT:
OTTMUST00000127689
UniParc:
UPI000003B3AC
definition
note
: transcript_id=ENSMUST00000027247
protein_id
: ENSMUSP00000027247
translation
: MQDPNADTEWNDILRKKGILPPKESLKELEEEEAEKEEQLLQQSVVKTYEDMTLEELEENEDEFSEEDERAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLVFGGMNLTIDELEWKLSESGAIKTALEENPKKPIQDLLLSSVRGPVPMRRDSDSEDD
name
Pdcl3 (ENSMUSG00000026078)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000127690
Vega_transcript:
Pdcl3-002
Uniprot/SPTREMBL:
A0A0A6YVT6
EMBL:
AC101277
GO:
GO:0001938
GO:
GO:0005737
GO:
GO:0006457
GO:
GO:0043184
GO:
GO:0044183
GO:
GO:0045766
GO:
GO:0050730
GO:
GO:2000059
MGI_trans_name:
Pdcl3-002
Vega_translation:
179084
Vega_translation:
OTTMUSP00000069076
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0006457
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000069076
OTTT:
OTTMUST00000127690
UniParc:
UPI00053BD818
definition
note
: transcript_id=ENSMUST00000193489
protein_id
: ENSMUSP00000141258
translation
: MQVSVASSGPQVCGRLAWWARARPGAGSTWISYRTRRTAGRPGAGALREGGCGPSGLLGWALLLRTPMQTPSGMTSYVKRASFPRRRA
name
type
misc_feature
link
xref
definition
note
: contig AC101277.16 1..172121(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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show
B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.