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name
Gm28551 (ENSMUSG00000099913)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Gm28551
note
: predicted gene 28551 [Source:MGI Symbol;Acc:MGI:5579257]
name
Asnsd1 (ENSMUSG00000026095)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Asnsd1
note
: asparagine synthetase domain containing 1 [Source:MGI Symbol;Acc:MGI:1917646]
name
Gm28551 (ENSMUSG00000099913)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000144660
name
Asnsd1 (ENSMUSG00000026095)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027264
name
Asnsd1 (ENSMUSG00000026095)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000123519
name
Asnsd1 (ENSMUSG00000026095)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000147021
name
Asnsd1 (ENSMUSG00000026095)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000154402
name
Gm28551 (ENSMUSG00000099913)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q8BFS9
Vega_transcript:
OTTMUST00000052030
Vega_transcript:
RP24-93I18.4-001
Fantom:
4930463K18
Fantom:
6030403M10
Fantom:
9430031J04
Fantom:
C330012F21
Fantom:
F630106E18
Fantom:
F630113L23
Fantom:
F630116P18
Fantom:
I730057K03
Clone_based_vega_transcript:RP24-93I18.4-001
EMBL:
AK031295
EMBL:
AK034746
EMBL:
AK049194
EMBL:
AK076793
EMBL:
AK154984
EMBL:
AK155030
EMBL:
AK168103
EMBL:
AK170510
EMBL:
BC013617
GO:
GO:0003674
GO:
GO:0004066
GO:
GO:0005575
GO:
GO:0005829
GO:
GO:0006529
GO:
GO:0006541
GO:
GO:0008150
GO:
GO:0042803
MGI_trans_name:
Gm28551-001
Vega_translation:
179287
Vega_translation:
OTTMUSP00000066962
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0006520
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016874
goslim_goa:
GO:0034641
goslim_goa:
GO:0044281
protein_id:
AAH13617.1
protein_id:
BAC27337.1
protein_id:
BAC28818.1
protein_id:
BAC33602.1
protein_id:
BAC36483.1
protein_id:
BAE32973.1
protein_id:
BAE33002.1
protein_id:
BAE40074.1
protein_id:
BAE41847.1
OTTP:
OTTMUSP00000066962
OTTT:
OTTMUST00000052030
UniParc:
UPI00004CB51D
definition
note
: transcript_id=ENSMUST00000144660
protein_id
: ENSMUSP00000139404
translation
: MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVLTIQPVEDEHGNVFLWNGEVFNGVKVEAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWSFIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGTQVYGVADQWQEVPASGIFQIDLNSAAVSRSVILKLYPWRYISKEDIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKPVVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILCLAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQKTGLPIPNIERKQQNHHEIPSEESSQSPAADEGPGEAEVPDRVTGKAGLKELQSVNPSRTWNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYKSSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDHGKEARFAQHVPVPFATSLTMHMLSDFC
name
Asnsd1 (ENSMUSG00000026095)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14954.1
Uniprot/SWISSPROT:
Q8BFS9
RefSeq_peptide:
NP_598489
RefSeq_mRNA:
NM_133728.3
Vega_transcript:
Asnsd1-001
Vega_transcript:
OTTMUST00000051332
UCSC:uc007azg.2
Fantom:
4930463K18
Fantom:
6030403M10
Fantom:
9430031J04
Fantom:
C330012F21
Fantom:
F630106E18
Fantom:
F630113L23
Fantom:
F630116P18
Fantom:
I730057K03
EMBL:
AK031295
EMBL:
AK034746
EMBL:
AK049194
EMBL:
AK076793
EMBL:
AK154984
EMBL:
AK155030
EMBL:
AK168103
EMBL:
AK170510
EMBL:
BC013617
GO:
GO:0003674
GO:
GO:0004066
GO:
GO:0005575
GO:
GO:0005829
GO:
GO:0006529
GO:
GO:0006541
GO:
GO:0008150
GO:
GO:0042803
MGI_trans_name:
Asnsd1-001
Vega_translation:
179288
Vega_translation:
OTTMUSP00000024130
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0006520
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016874
goslim_goa:
GO:0034641
goslim_goa:
GO:0044281
protein_id:
AAH13617.1
protein_id:
BAC27337.1
protein_id:
BAC28818.1
protein_id:
BAC33602.1
protein_id:
BAC36483.1
protein_id:
BAE32973.1
protein_id:
BAE33002.1
protein_id:
BAE40074.1
protein_id:
BAE41847.1
OTTP:
OTTMUSP00000024130
OTTT:
OTTMUST00000051332
UniParc:
UPI00000227D0
definition
note
: transcript_id=ENSMUST00000027264
protein_id
: ENSMUSP00000027264
translation
: MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVLTIQPVEDEHGNVFLWNGEVFNGVKVEAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWSFIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGTQVYGVADQWQEVPASGIFQIDLNSAAVSRSVILKLYPWRYISKEDIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKPVVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILCLAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQKTGLPIPNIERKQQNHHEIPSEESSQSPAADEGPGEAEVPDRVTGKAGLKELQSVNPSRTWNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYKSSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAIQFGSRIAKLEKSNEKASDKCGRLQILP
name
Asnsd1 (ENSMUSG00000026095)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS69888.1
RefSeq_peptide:
NP_001277913
RefSeq_mRNA:
NM_001290984.1
RefSeq_mRNA_predicted:
XM_006496275
Vega_transcript:
Asnsd1-005
Vega_transcript:
OTTMUST00000051336
Uniprot/SPTREMBL:
Q3TGY6
UCSC:uc007azh.2
Fantom:
I920030D08
EMBL:
AC153650
EMBL:
AK168534
EMBL:
CH466548
GO:
GO:0003674
GO:
GO:0004066
GO:
GO:0005575
GO:
GO:0005829
GO:
GO:0006529
GO:
GO:0006541
GO:
GO:0008150
GO:
GO:0042803
MGI_trans_name:
Asnsd1-005
Vega_translation:
179289
Vega_translation:
OTTMUSP00000065566
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0006520
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016874
goslim_goa:
GO:0034641
goslim_goa:
GO:0044281
protein_id:
BAE40412.1
protein_id:
EDK99996.1
OTTP:
OTTMUSP00000065566
OTTT:
OTTMUST00000051336
UniParc:
UPI00005B24C8
definition
note
: transcript_id=ENSMUST00000123519
protein_id
: ENSMUSP00000139025
translation
: MCGICCSVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAIQFGSRIAKLEKSNEKASDKCGRLQILP
name
Asnsd1 (ENSMUSG00000026095)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Asnsd1-004
Vega_transcript:
OTTMUST00000051335
Uniprot/SPTREMBL:
D3Z0F1
EMBL:
AC153650
GO:
GO:0003674
GO:
GO:0004066
GO:
GO:0005575
GO:
GO:0005829
GO:
GO:0006529
GO:
GO:0006541
GO:
GO:0008150
GO:
GO:0042803
MGI_trans_name:
Asnsd1-004
Vega_translation:
179291
Vega_translation:
OTTMUSP00000024131
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005829
goslim_goa:
GO:0006520
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016874
goslim_goa:
GO:0034641
goslim_goa:
GO:0044281
OTTP:
OTTMUSP00000024131
OTTT:
OTTMUST00000051335
UniParc:
UPI0000F2206B
definition
note
: transcript_id=ENSMUST00000154402
protein_id
: ENSMUSP00000120873
translation
: MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVLTIQPVEDEHGNVFLWN
name
type
misc_feature
link
xref
definition
note
: contig AC153650.4 1..162834(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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show
Gene, mRNA, CDS :
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show
MSM BAC end pairs :
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show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.