VariantTable
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name
Sf3b1 (ENSMUSG00000025982)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sf3b1
note
: splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
name
Sf3b1 (ENSMUSG00000025982)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027127
name
Sf3b1 (ENSMUSG00000025982)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS35567.1
RefSeq_peptide:
NP_112456
RefSeq_mRNA:
NM_031179.2
Vega_transcript:
OTTMUST00000121704
Vega_transcript:
Sf3b1-001
Uniprot/SPTREMBL:
G5E866
UCSC:uc007azx.2
EMBL:
AC108391
EMBL:
AC166111
EMBL:
CH466548
GO:
GO:0000375
GO:
GO:0000398
GO:
GO:0000785
GO:
GO:0001825
GO:
GO:0003682
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005681
GO:
GO:0005689
GO:
GO:0005689
GO:
GO:0008380
GO:
GO:0009952
GO:
GO:0016363
GO:
GO:0030532
GO:
GO:0044822
GO:
GO:0044822
GO:
GO:0071013
GO:
GO:0071013
MGI_trans_name:
Sf3b1-001
Vega_translation:
179304
Vega_translation:
OTTMUSP00000066983
goslim_goa:
GO:0003674
goslim_goa:
GO:0003723
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0006397
goslim_goa:
GO:0008150
goslim_goa:
GO:0009790
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
EDL00014.1
OTTP:
OTTMUSP00000066983
OTTT:
OTTMUST00000121704
Reactome:
R-MMU-72163
Reactome:
R-MMU-72165
Reactome:
R-MMU-72172
Reactome:
R-MMU-72203
Reactome:
R-MMU-74160
UniParc:
UPI000013D493
definition
note
: transcript_id=ENSMUST00000027127
protein_id
: ENSMUSP00000027127
translation
: MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
name
type
misc_feature
link
xref
definition
note
: contig AC166111.4 5218..185692(1)
name
Sf3b1 (ENSMUSG00000025982)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000121707
Vega_transcript:
OTTMUST00000121707
MGI_trans_name:
Sf3b1-003
OTTT:
OTTMUST00000121707
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000187500
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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show
Gene, mRNA, CDS :
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show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.