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name
Glis3 (ENSMUSG00000052942)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Glis3
note
: GLIS family zinc finger 3 [Source:MGI Symbol;Acc:MGI:2444289]
name
Glis3 (ENSMUSG00000052942)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000162022
name
Glis3 (ENSMUSG00000052942)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000065113
name
Glis3 (ENSMUSG00000052942)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000112612
name
Glis3 (ENSMUSG00000052942)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS37947.1
RefSeq_peptide:
NP_780668
RefSeq_mRNA:
NM_175459.5
RefSeq_mRNA_predicted:
XM_006526984
RefSeq_peptide_predicted:
XP_006527047.1
Vega_transcript:
Glis3-001
Vega_transcript:
OTTMUST00000083540
Uniprot/SPTREMBL:
Q0GE24
UCSC:uc008hci.2
EMBL:
AC116137
EMBL:
AC116863
EMBL:
AC118934
EMBL:
AC161521
EMBL:
DQ871027
GO:
GO:0000122
GO:
GO:0003677
GO:
GO:0003700
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005794
GO:
GO:0005794
GO:
GO:0045944
GO:
GO:0046872
MGI_trans_name:
Glis3-001
Vega_translation:
222504
Vega_translation:
OTTMUSP00000044916
goslim_goa:
GO:0001071
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0005794
goslim_goa:
GO:0008150
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
ABI31654.1
OTTP:
OTTMUSP00000044916
OTTT:
OTTMUST00000083540
UniParc:
UPI0000DD5C4E
definition
note
: transcript_id=ENSMUST00000162022
protein_id
: ENSMUSP00000124635
translation
: MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHLKMSSGAGMAPQSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFGDPFSPNPEKGALGFGPQCKSIGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISPSLPRAVNAANLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEWSQSYRAFPSLSSSHSSQNGTDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENSHSPYPSPRHSATRAHSTRSKKRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYGHFLGVRGSCIPQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPGQDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSLSLAQTGLEEDGEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTGCPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARKKLRSSTELHPDLLTDCLAVQPLQPATSPGDAADHTVGHSPGPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPPTPSPHHISPGRVPAPPSLLQRAQAPHSQQPPGSLLKPYQPETNSSFQPNGIHVHGFYGQLQTFCPPHYPDSQRTVPPSGSCSMVPSFEDCLVPTSMGQAGFDVFHRAFSTHSGITVYDLPSASSSLFGESLRSGPEDPTFLQLSAVDRCPSQLSSVYTEG
name
Glis3 (ENSMUSG00000052942)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q6XP49
RefSeq_peptide_predicted:
XP_006527050.1
Vega_transcript:
Glis3-002
Vega_transcript:
OTTMUST00000083541
GO:
GO:0000122
GO:
GO:0000978
GO:
GO:0001077
GO:
GO:0001078
GO:
GO:0003677
GO:
GO:0003700
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005794
GO:
GO:0006366
GO:
GO:0045944
GO:
GO:0046872
MGI_trans_name:
Glis3-002
Vega_translation:
222505
Vega_translation:
OTTMUSP00000044917
goslim_goa:
GO:0001071
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000044917
OTTT:
OTTMUST00000083541
UniParc:
UPI0000434F1F
definition
note
: transcript_id=ENSMUST00000112612
protein_id
: ENSMUSP00000108231
translation
: MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHLKMSSGAGMAPQSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFGDPFSPNPEKGALGFGPQCKSIGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISPSLPRAVNAANLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEWSQSYRAFPSLSSSHSSQNGTDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENSHSPYPSPRHSATRAHSTRSKKRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYGHFLGVRGSCIPQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPGQDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSLSLAQTGLEEDGEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTGCPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARKKLTNICASSHW
name
type
misc_feature
link
xref
definition
note
: contig AC116137.19 1..95981(-1)
name
Glis3 (ENSMUSG00000052942)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000083546
Vega_transcript:
OTTMUST00000083546
MGI_trans_name:
Glis3-007
OTTT:
OTTMUST00000083546
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000161026
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
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show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.