VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Gm37240 (ENSMUSG00000102805)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Gm37240
note
: predicted gene, 37240 [Source:MGI Symbol;Acc:MGI:5610468]
name
Tigd4 (ENSMUSG00000047819)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Tigd4
note
: tigger transposable element derived 4 [Source:MGI Symbol;Acc:MGI:2685264]
name
Gm37240 (ENSMUSG00000102805)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000154148
name
Tigd4 (ENSMUSG00000047819)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000062623
name
Tigd4 (ENSMUSG00000047819)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17439.1
Uniprot/SWISSPROT:
Q8BUZ3
RefSeq_peptide:
NP_997161
RefSeq_mRNA:
NM_207278.2
Vega_transcript:
OTTMUST00000130261
Vega_transcript:
Tigd4-001
UCSC:uc008pqh.1
Fantom:
C130063O11
EMBL:
AK081667
GO:
GO:0003674
GO:
GO:0003677
GO:
GO:0005575
GO:
GO:0005634
GO:
GO:0008150
MGI_trans_name:
Tigd4-001
Vega_translation:
187426
Vega_translation:
OTTMUSP00000069852
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
protein_id:
BAC38284.1
OTTP:
OTTMUSP00000069852
OTTT:
OTTMUST00000130261
UniParc:
UPI00000EA998
definition
note
: transcript_id=ENSMUST00000062623
protein_id
: ENSMUSP00000052320
translation
: MAEASVDIGTQPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRYGLVFRAQPVEATGISIDPSTVWYQNVLPYYLNDYHPKNVFNVKETGLLYRMLPTNTFAFKGETCSVGKLCKDRITLALGTNMDGSEKLPLLIIGKNRAPRCFKGIKSLPVYYEANRTAWMTAAIFEQWMQKLDEKFQAQKRRVVIFVDSCPAHPEVKNLKSIELAFFPSCLSSGFAAMNQGVIKSLKIKYRHCLIKKFLSSVESSKEFTFSLLDAVDTLHLCWRAVTPETIVKSYEEAGFRSPKGENDTANADAAVALDLTAHAVGAGVEFLEGLSIEEYAALDEDLETCEATQKDDAEWAGESKQDETGLYTSDEEEEDSGALEVDLPSPSKKDALSAVGTLKRFLRSHDLNDELHGSLADLENFINALSPK
name
type
misc_feature
link
xref
definition
note
: contig AC102224.21 1..172788(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.