VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Kirrel (ENSMUSG00000041734)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Kirrel
note
: kin of IRRE like (Drosophila) [Source:MGI Symbol;Acc:MGI:1891396]
name
Kirrel (ENSMUSG00000041734)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000159976
name
Kirrel (ENSMUSG00000041734)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107618
name
Kirrel (ENSMUSG00000041734)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000041732
name
Kirrel (ENSMUSG00000041734)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17450.1
Uniprot/SWISSPROT:
Q80W68
RefSeq_peptide_predicted:
XP_006501139.1
RefSeq_peptide_predicted:
XP_011238330.1
RefSeq_peptide_predicted:
XP_011238331.1
Vega_transcript:
Kirrel-001
Vega_transcript:
OTTMUST00000089111
UCSC:uc008pru.2
UCSC:uc008prw.2
EMBL:
AF480411
EMBL:
AY017368
EMBL:
AY243095
EMBL:
BC023765
GO:
GO:0001933
GO:
GO:0005515
GO:
GO:0005886
GO:
GO:0005911
GO:
GO:0007588
GO:
GO:0016021
GO:
GO:0016337
GO:
GO:0017022
GO:
GO:0030838
GO:
GO:0043198
GO:
GO:0048471
GO:
GO:0070062
MGI_trans_name:
Kirrel-001
PDB:
4OFD
Vega_translation:
187453
Vega_translation:
OTTMUSP00000048648
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
protein_id:
AAH23765.3
protein_id:
AAK00528.1
protein_id:
AAN73043.1
protein_id:
AAO91769.1
OTTP:
OTTMUSP00000048648
OTTT:
OTTMUST00000089111
Reactome:
R-MMU-1500931
Reactome:
R-MMU-373753
UniParc:
UPI000018D4FB
definition
note
: transcript_id=ENSMUST00000159976
protein_id
: ENSMUSP00000125525
translation
: MTLESPSTRLMTCQSSLLPEKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILVVFSFAALVFFLYRRRKGSRKDVTLRKLDIKVETVNREPLTMHSDREDDTASISTATRVMKAIYSSFKDDVDLKQDLRCDTIDTREEYEMKDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSAPGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTPYEAYDPIGKYATATRFSYTSQHSDYGQRFQQRMQTHV
name
Kirrel (ENSMUSG00000041734)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17450.1
Uniprot/SWISSPROT:
Q80W68
RefSeq_peptide:
NP_001164456
RefSeq_peptide:
NP_570937
RefSeq_mRNA:
NM_001170985.1
RefSeq_mRNA:
NM_130867.3
RefSeq_peptide_predicted:
XP_006501139.1
RefSeq_peptide_predicted:
XP_011238330.1
RefSeq_peptide_predicted:
XP_011238331.1
UCSC:uc008pru.2
UCSC:uc008prw.2
EMBL:
AF480411
EMBL:
AY017368
EMBL:
AY243095
EMBL:
BC023765
GO:
GO:0001933
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005886
GO:
GO:0005886
GO:
GO:0005911
GO:
GO:0005911
GO:
GO:0005911
GO:
GO:0007588
GO:
GO:0016021
GO:
GO:0016337
GO:
GO:0017022
GO:
GO:0017022
GO:
GO:0030838
GO:
GO:0031253
GO:
GO:0043198
GO:
GO:0045121
GO:
GO:0048471
GO:
GO:0048471
GO:
GO:0070062
GO:
GO:0070062
MGI_trans_name:
Kirrel-201
PDB:
4OFD
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
protein_id:
AAH23765.3
protein_id:
AAK00528.1
protein_id:
AAN73043.1
protein_id:
AAO91769.1
Reactome:
R-MMU-1500931
Reactome:
R-MMU-373753
UniParc:
UPI000018D4FB
definition
note
: transcript_id=ENSMUST00000107618
protein_id
: ENSMUSP00000103243
translation
: MTLESPSTRLMTCQSSLLPEKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILVVFSFAALVFFLYRRRKGSRKDVTLRKLDIKVETVNREPLTMHSDREDDTASISTATRVMKAIYSSFKDDVDLKQDLRCDTIDTREEYEMKDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSAPGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTPYEAYDPIGKYATATRFSYTSQHSDYGQRFQQRMQTHV
name
Kirrel (ENSMUSG00000041734)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q80W68
Vega_transcript:
Kirrel-002
Vega_transcript:
OTTMUST00000089112
UCSC:uc008prx.2
EMBL:
AF480411
EMBL:
AY017368
EMBL:
AY243095
EMBL:
BC023765
GO:
GO:0001933
GO:
GO:0005515
GO:
GO:0005886
GO:
GO:0005911
GO:
GO:0007588
GO:
GO:0016021
GO:
GO:0016337
GO:
GO:0017022
GO:
GO:0030838
GO:
GO:0043198
GO:
GO:0048471
GO:
GO:0070062
MGI_trans_name:
Kirrel-002
PDB:
4OFD
Vega_translation:
187454
Vega_translation:
OTTMUSP00000048649
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
protein_id:
AAH23765.3
protein_id:
AAK00528.1
protein_id:
AAN73043.1
protein_id:
AAO91769.1
OTTP:
OTTMUSP00000048649
OTTT:
OTTMUST00000089112
Reactome:
R-MMU-1500931
Reactome:
R-MMU-373753
UniParc:
UPI0000443FBF
definition
note
: transcript_id=ENSMUST00000041732
protein_id
: ENSMUSP00000043756
translation
: MTLESPSTRLMTCQSSLLPEKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILVVFSFAALVFFLYRRRKGSRKDVTLRKLDIKVETVNREPLTMHSDREDDTASISTATRVMKAIYSVRIMLLSTWPRLFIVLRPAPPAFNDFRYL
name
type
misc_feature
link
xref
definition
note
: contig AC102115.11 1..184058(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.