VariantTable
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name
Sema4a (ENSMUSG00000028064)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sema4a
note
: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:MGI Symbol;Acc:MGI:107560]
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000029700
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107531
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000166237
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000165898
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000169222
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000185137
name
Sema4a (ENSMUSG00000028064)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000184487
name
Sema4a (ENSMUSG00000028064)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17475.1
Uniprot/SWISSPROT:
Q62178
RefSeq_peptide:
NP_038686
RefSeq_mRNA:
NM_013658.3
RefSeq_mRNA_predicted:
XM_006501188.2
RefSeq_mRNA_predicted:
XM_006501189.1
RefSeq_peptide_predicted:
XP_006501250.1
RefSeq_peptide_predicted:
XP_006501251.1
RefSeq_peptide_predicted:
XP_006501252.1
Vega_transcript:
OTTMUST00000050356
Vega_transcript:
Sema4a-001
UCSC:uc008pvh.2
EMBL:
AC102388
EMBL:
CH466547
EMBL:
X85991
GO:
GO:0001525
GO:
GO:0002292
GO:
GO:0005886
GO:
GO:0007409
GO:
GO:0008360
GO:
GO:0010594
GO:
GO:0016021
GO:
GO:0016525
GO:
GO:0045063
GO:
GO:0071526
MGI_trans_name:
Sema4a-001
Vega_translation:
187558
Vega_translation:
OTTMUSP00000023497
goslim_goa:
GO:0000902
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
CAA59983.1
protein_id:
EDL15277.1
protein_id:
EDL15278.1
protein_id:
EDL15279.1
OTTP:
OTTMUSP00000023497
OTTT:
OTTMUST00000050356
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000022DA6
definition
note
: transcript_id=ENSMUST00000029700
protein_id
: ENSMUSP00000029700
translation
: MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA
name
Sema4a (ENSMUSG00000028064)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide_predicted:
XP_006501253.1
RefSeq_peptide_predicted:
XP_011238354.1
Vega_transcript:
OTTMUST00000050357
Vega_transcript:
Sema4a-002
Uniprot/SPTREMBL:
D3YWV5
UCSC:uc008pvh.2
EMBL:
AC102388
GO:
GO:0016021
MGI_trans_name:
Sema4a-002
Vega_translation:
187559
Vega_translation:
OTTMUSP00000023498
goslim_goa:
GO:0005575
OTTP:
OTTMUSP00000023498
OTTT:
OTTMUST00000050357
UniParc:
UPI0000F22263
definition
note
: transcript_id=ENSMUST00000107531
protein_id
: ENSMUSP00000103155
translation
: MIPWPASERKKTECAFKKKSNEELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA
name
Sema4a (ENSMUSG00000028064)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17475.1
Uniprot/SWISSPROT:
Q62178
RefSeq_peptide:
NP_001156961
RefSeq_mRNA:
NM_001163489.1
RefSeq_mRNA_predicted:
XM_006501191.1
RefSeq_mRNA_predicted:
XM_011240051.1
RefSeq_peptide_predicted:
XP_006501250.1
RefSeq_peptide_predicted:
XP_006501254.1
RefSeq_peptide_predicted:
XP_011238353.1
UCSC:uc008pvi.2
EMBL:
AC102388
EMBL:
CH466547
EMBL:
X85991
GO:
GO:0001525
GO:
GO:0002292
GO:
GO:0005886
GO:
GO:0007409
GO:
GO:0008360
GO:
GO:0010594
GO:
GO:0016021
GO:
GO:0016525
GO:
GO:0045063
GO:
GO:0071526
MGI_trans_name:
Sema4a-202
goslim_goa:
GO:0000902
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
CAA59983.1
protein_id:
EDL15277.1
protein_id:
EDL15278.1
protein_id:
EDL15279.1
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000022DA6
definition
note
: transcript_id=ENSMUST00000166237
protein_id
: ENSMUSP00000125909
translation
: MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA
name
Sema4a (ENSMUSG00000028064)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17475.1
Uniprot/SWISSPROT:
Q62178
RefSeq_peptide:
NP_001156962
RefSeq_mRNA:
NM_001163490.1
RefSeq_peptide_predicted:
XP_006501250.1
UCSC:uc012crw.1
EMBL:
AC102388
EMBL:
CH466547
EMBL:
X85991
GO:
GO:0001525
GO:
GO:0002292
GO:
GO:0005886
GO:
GO:0007409
GO:
GO:0008360
GO:
GO:0010594
GO:
GO:0016021
GO:
GO:0016525
GO:
GO:0045063
GO:
GO:0071526
MGI_trans_name:
Sema4a-201
goslim_goa:
GO:0000902
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
CAA59983.1
protein_id:
EDL15277.1
protein_id:
EDL15278.1
protein_id:
EDL15279.1
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000022DA6
definition
note
: transcript_id=ENSMUST00000165898
protein_id
: ENSMUSP00000128510
translation
: MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA
name
Sema4a (ENSMUSG00000028064)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17475.1
Uniprot/SWISSPROT:
Q62178
RefSeq_peptide:
NP_001156963
RefSeq_mRNA:
NM_001163491.1
RefSeq_peptide_predicted:
XP_006501250.1
UCSC:uc012crv.1
EMBL:
AC102388
EMBL:
CH466547
EMBL:
X85991
GO:
GO:0001525
GO:
GO:0002292
GO:
GO:0005886
GO:
GO:0007409
GO:
GO:0008360
GO:
GO:0010594
GO:
GO:0016021
GO:
GO:0016525
GO:
GO:0045063
GO:
GO:0071526
MGI_trans_name:
Sema4a-203
goslim_goa:
GO:0000902
goslim_goa:
GO:0002376
goslim_goa:
GO:0005575
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
protein_id:
CAA59983.1
protein_id:
EDL15277.1
protein_id:
EDL15278.1
protein_id:
EDL15279.1
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000022DA6
definition
note
: transcript_id=ENSMUST00000169222
protein_id
: ENSMUSP00000128887
translation
: MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA
name
type
misc_feature
link
xref
definition
note
: contig AC102388.7 1..123947(-1)
name
Sema4a (ENSMUSG00000028064)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000050369
Vega_transcript:
OTTMUST00000050369
MGI_trans_name:
Sema4a-014
OTTT:
OTTMUST00000050369
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000149145
name
Sema4a (ENSMUSG00000028064)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000050361
Vega_transcript:
OTTMUST00000050361
MGI_trans_name:
Sema4a-006
OTTT:
OTTMUST00000050361
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000135732
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.