VariantTable
SequenceCutter
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Updated genome
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name
Lmna (ENSMUSG00000028063)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Lmna
note
: lamin A [Source:MGI Symbol;Acc:MGI:96794]
name
Lmna (ENSMUSG00000028063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000029699
name
Lmna (ENSMUSG00000028063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000120377
name
Lmna (ENSMUSG00000028063)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000036252
name
Lmna (ENSMUSG00000028063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS38482.1
Uniprot/SWISSPROT:
P48678
RefSeq_peptide:
NP_001002011
RefSeq_mRNA:
NM_001002011.3
RefSeq_mRNA_predicted:
XM_006501073
RefSeq_peptide_predicted:
XP_006501136.1
Vega_transcript:
Lmna-001
Vega_transcript:
OTTMUST00000075092
UCSC:uc008pvj.3
Fantom:
1200006N04
Fantom:
4833421L13
Fantom:
G530116F06
Fantom:
I730033H02
Fantom:
I830006I05
Fantom:
I830008L05
Fantom:
I830012N14
Fantom:
I830078J09
Fantom:
I830081L20
Fantom:
I830087H20
Fantom:
I920188N09
EMBL:
AK004619
EMBL:
AK147150
EMBL:
AK149998
EMBL:
AK150391
EMBL:
AK150501
EMBL:
AK150624
EMBL:
AK152539
EMBL:
AK152646
EMBL:
AK152846
EMBL:
AK161221
EMBL:
AK167858
EMBL:
BC015302
EMBL:
BC094020
EMBL:
CH466547
EMBL:
D13181
EMBL:
D14850
EMBL:
D49733
EMBL:
DQ832702
EMBL:
DQ832703
EMBL:
X14170
GO:
GO:0005198
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005635
GO:
GO:0005635
GO:
GO:0005638
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0006997
GO:
GO:0006998
GO:
GO:0007283
GO:
GO:0007517
GO:
GO:0007517
GO:
GO:0016363
GO:
GO:0030010
GO:
GO:0030334
GO:
GO:0030951
GO:
GO:0031965
GO:
GO:0031965
GO:
GO:0034504
GO:
GO:0035105
GO:
GO:0048471
GO:
GO:0048471
GO:
GO:0055015
GO:
GO:0071456
GO:
GO:0071456
GO:
GO:0090201
GO:
GO:0090343
GO:
GO:0090343
GO:
GO:1900180
GO:
GO:2001237
MGI_trans_name:
Lmna-001
PDB:
1UFG
Vega_translation:
187568
Vega_translation:
OTTMUSP00000039297
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005635
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0006605
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007010
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
goslim_goa:
GO:0061024
protein_id:
AAH15302.1
protein_id:
AAH94020.1
protein_id:
ABI16251.1
protein_id:
ABI16252.1
protein_id:
BAA02476.1
protein_id:
BAA03578.1
protein_id:
BAA08569.1
protein_id:
BAA08570.1
protein_id:
BAA08571.1
protein_id:
BAB23415.1
protein_id:
BAE27717.1
protein_id:
BAE29226.1
protein_id:
BAE29519.1
protein_id:
BAE29614.1
protein_id:
BAE29714.1
protein_id:
BAE31294.1
protein_id:
BAE31384.1
protein_id:
BAE31539.1
protein_id:
BAE36246.1
protein_id:
BAE39876.1
protein_id:
CAA32372.1
protein_id:
EDL15275.1
OTTP:
OTTMUSP00000039297
OTTT:
OTTMUST00000075092
Reactome:
R-MMU-109581
Reactome:
R-MMU-111465
Reactome:
R-MMU-1640170
Reactome:
R-MMU-2555396
Reactome:
R-MMU-2980766
Reactome:
R-MMU-2993913
Reactome:
R-MMU-2995383
Reactome:
R-MMU-2995410
Reactome:
R-MMU-352238
Reactome:
R-MMU-4419969
Reactome:
R-MMU-5357801
Reactome:
R-MMU-68875
Reactome:
R-MMU-68882
Reactome:
R-MMU-68886
Reactome:
R-MMU-69278
Reactome:
R-MMU-75153
UniParc:
UPI0000029392
definition
note
: transcript_id=ENSMUST00000029699
protein_id
: ENSMUSP00000029699
translation
: METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRGSHCSGSGDPAEYNLRSRTVLCGTCGQPADKAAGGAGAQVGGSISSGSSASSVTVTRSFRSVGGSGGGSFGDNLVTRSYLLGNSSPRSQSSQNCSIM
name
Lmna (ENSMUSG00000028063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS50951.1
Uniprot/SWISSPROT:
P48678
RefSeq_peptide:
NP_001104572
RefSeq_mRNA:
NM_001111102.2
Vega_transcript:
Lmna-002
Vega_transcript:
OTTMUST00000075093
UCSC:uc008pvl.3
Fantom:
1200006N04
Fantom:
4833421L13
Fantom:
G530116F06
Fantom:
I730033H02
Fantom:
I830006I05
Fantom:
I830008L05
Fantom:
I830012N14
Fantom:
I830078J09
Fantom:
I830081L20
Fantom:
I830087H20
Fantom:
I920188N09
EMBL:
AK004619
EMBL:
AK147150
EMBL:
AK149998
EMBL:
AK150391
EMBL:
AK150501
EMBL:
AK150624
EMBL:
AK152539
EMBL:
AK152646
EMBL:
AK152846
EMBL:
AK161221
EMBL:
AK167858
EMBL:
BC015302
EMBL:
BC094020
EMBL:
CH466547
EMBL:
D13181
EMBL:
D14850
EMBL:
D49733
EMBL:
DQ832702
EMBL:
DQ832703
EMBL:
X14170
GO:
GO:0005198
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005635
GO:
GO:0005638
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0006997
GO:
GO:0006998
GO:
GO:0007517
GO:
GO:0030010
GO:
GO:0030334
GO:
GO:0030951
GO:
GO:0031965
GO:
GO:0034504
GO:
GO:0035105
GO:
GO:0048471
GO:
GO:0055015
GO:
GO:0071456
GO:
GO:0090201
GO:
GO:0090343
GO:
GO:1900180
GO:
GO:2001237
MGI_trans_name:
Lmna-002
PDB:
1UFG
Vega_translation:
187569
Vega_translation:
OTTMUSP00000039298
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005635
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0006605
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007010
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
goslim_goa:
GO:0061024
protein_id:
AAH15302.1
protein_id:
AAH94020.1
protein_id:
ABI16251.1
protein_id:
ABI16252.1
protein_id:
BAA02476.1
protein_id:
BAA03578.1
protein_id:
BAA08569.1
protein_id:
BAA08570.1
protein_id:
BAA08571.1
protein_id:
BAB23415.1
protein_id:
BAE27717.1
protein_id:
BAE29226.1
protein_id:
BAE29519.1
protein_id:
BAE29614.1
protein_id:
BAE29714.1
protein_id:
BAE31294.1
protein_id:
BAE31384.1
protein_id:
BAE31539.1
protein_id:
BAE36246.1
protein_id:
BAE39876.1
protein_id:
CAA32372.1
protein_id:
EDL15275.1
OTTP:
OTTMUSP00000039298
OTTT:
OTTMUST00000075093
Reactome:
R-MMU-109581
Reactome:
R-MMU-111465
Reactome:
R-MMU-1640170
Reactome:
R-MMU-2555396
Reactome:
R-MMU-2980766
Reactome:
R-MMU-2993913
Reactome:
R-MMU-2995383
Reactome:
R-MMU-2995410
Reactome:
R-MMU-352238
Reactome:
R-MMU-4419969
Reactome:
R-MMU-5357801
Reactome:
R-MMU-68875
Reactome:
R-MMU-68882
Reactome:
R-MMU-68886
Reactome:
R-MMU-69278
Reactome:
R-MMU-75153
UniParc:
UPI00000279E2
definition
note
: transcript_id=ENSMUST00000120377
protein_id
: ENSMUSP00000113093
translation
: METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR
name
Lmna (ENSMUSG00000028063)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS38483.1
Uniprot/SWISSPROT:
P48678
RefSeq_peptide:
NP_062263
RefSeq_mRNA:
NM_019390.3
Vega_transcript:
Lmna-003
Vega_transcript:
OTTMUST00000075094
UCSC:uc008pvk.3
Fantom:
1200006N04
Fantom:
4833421L13
Fantom:
G530116F06
Fantom:
I730033H02
Fantom:
I830006I05
Fantom:
I830008L05
Fantom:
I830012N14
Fantom:
I830078J09
Fantom:
I830081L20
Fantom:
I830087H20
Fantom:
I920188N09
EMBL:
AK004619
EMBL:
AK147150
EMBL:
AK149998
EMBL:
AK150391
EMBL:
AK150501
EMBL:
AK150624
EMBL:
AK152539
EMBL:
AK152646
EMBL:
AK152846
EMBL:
AK161221
EMBL:
AK167858
EMBL:
BC015302
EMBL:
BC094020
EMBL:
CH466547
EMBL:
D13181
EMBL:
D14850
EMBL:
D49733
EMBL:
DQ832702
EMBL:
DQ832703
EMBL:
X14170
GO:
GO:0005198
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005635
GO:
GO:0005638
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0006997
GO:
GO:0006998
GO:
GO:0007517
GO:
GO:0030010
GO:
GO:0030334
GO:
GO:0030951
GO:
GO:0031965
GO:
GO:0034504
GO:
GO:0035105
GO:
GO:0048471
GO:
GO:0055015
GO:
GO:0071456
GO:
GO:0090201
GO:
GO:0090343
GO:
GO:1900180
GO:
GO:2001237
MGI_trans_name:
Lmna-003
PDB:
1UFG
Vega_translation:
187570
Vega_translation:
OTTMUSP00000039299
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005635
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0006605
goslim_goa:
GO:0006810
goslim_goa:
GO:0006913
goslim_goa:
GO:0006950
goslim_goa:
GO:0007010
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
goslim_goa:
GO:0061024
protein_id:
AAH15302.1
protein_id:
AAH94020.1
protein_id:
ABI16251.1
protein_id:
ABI16252.1
protein_id:
BAA02476.1
protein_id:
BAA03578.1
protein_id:
BAA08569.1
protein_id:
BAA08570.1
protein_id:
BAA08571.1
protein_id:
BAB23415.1
protein_id:
BAE27717.1
protein_id:
BAE29226.1
protein_id:
BAE29519.1
protein_id:
BAE29614.1
protein_id:
BAE29714.1
protein_id:
BAE31294.1
protein_id:
BAE31384.1
protein_id:
BAE31539.1
protein_id:
BAE36246.1
protein_id:
BAE39876.1
protein_id:
CAA32372.1
protein_id:
EDL15275.1
OTTP:
OTTMUSP00000039299
OTTT:
OTTMUST00000075094
Reactome:
R-MMU-109581
Reactome:
R-MMU-111465
Reactome:
R-MMU-1640170
Reactome:
R-MMU-2555396
Reactome:
R-MMU-2980766
Reactome:
R-MMU-2993913
Reactome:
R-MMU-2995383
Reactome:
R-MMU-2995410
Reactome:
R-MMU-352238
Reactome:
R-MMU-4419969
Reactome:
R-MMU-5357801
Reactome:
R-MMU-68875
Reactome:
R-MMU-68882
Reactome:
R-MMU-68886
Reactome:
R-MMU-69278
Reactome:
R-MMU-75153
UniParc:
UPI0000023EF0
definition
note
: transcript_id=ENSMUST00000036252
protein_id
: ENSMUSP00000040265
translation
: MGNAEGRNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR
name
type
misc_feature
link
xref
definition
note
: contig AC102388.7 1..123947(-1)
name
Lmna (ENSMUSG00000028063)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000075096
Vega_transcript:
OTTMUST00000075096
MGI_trans_name:
Lmna-005
OTTT:
OTTMUST00000075096
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000135494
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.