VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Pbxip1 (ENSMUSG00000042613)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pbxip1
note
: pre B cell leukemia transcription factor interacting protein 1 [Source:MGI Symbol;Acc:MGI:2441670]
name
Pbxip1 (ENSMUSG00000042613)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000038942
name
Pbxip1 (ENSMUSG00000042613)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17510.1
Uniprot/SWISSPROT:
Q3TVI8
RefSeq_peptide:
NP_666243
RefSeq_mRNA:
NM_146131.2
RefSeq_mRNA_predicted:
XM_006501351.1
RefSeq_mRNA_predicted:
XM_006501352.1
RefSeq_mRNA_predicted:
XM_006501353
RefSeq_peptide_predicted:
XP_006501414.1
RefSeq_peptide_predicted:
XP_006501415.1
RefSeq_peptide_predicted:
XP_006501416.1
Vega_transcript:
OTTMUST00000052415
Vega_transcript:
Pbxip1-001
UCSC:uc008pzr.2
Fantom:
4732463H20
Fantom:
F630046N07
Fantom:
I420019M04
Fantom:
I420020F02
Fantom:
I420026I05
Fantom:
I420049E19
EMBL:
AK028858
EMBL:
AK159422
EMBL:
AK159448
EMBL:
AK159633
EMBL:
AK160103
EMBL:
AK170318
EMBL:
BC026838
EMBL:
BC027771
EMBL:
BC034200
GO:
GO:0003674
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005874
GO:
GO:0008150
MGI_trans_name:
Pbxip1-001
Vega_translation:
187729
Vega_translation:
OTTMUSP00000024856
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0005856
goslim_goa:
GO:0008150
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
protein_id:
AAH26838.1
protein_id:
AAH27771.1
protein_id:
AAH34200.1
protein_id:
BAC26157.1
protein_id:
BAE35070.1
protein_id:
BAE35092.1
protein_id:
BAE35247.1
protein_id:
BAE35630.1
protein_id:
BAE41713.1
OTTP:
OTTMUSP00000024856
OTTT:
OTTMUST00000052415
UniParc:
UPI0000028102
definition
note
: transcript_id=ENSMUST00000038942
protein_id
: ENSMUSP00000040429
translation
: MASCPDSDNSWVLAGSENLPVETLGPEPRMDPESEGASQALRDSSKADGKELAGTLDGEEKLFQTESSQRETAVLTESAAKGTLGADGHGTEAPGDTVVQEDSQETPVATSLGPDTQDLESEIHPQNLPSSPRAVWKEHRCSSSDDDTDVDVEGLRRRRGREPSSSQPVVPVDVEDQAKGEGIGGELGISLNMCFLGALVLLGLGILLFSGTLLEPETGPMEEAELQVFPETGPETELVETLGNRQDEIEHLQASSVPPDSVPSLQSMGFLLDKLAKENQDIRLLQAQLQAQKEELQSLLHQPKGLEEENARLREALQQGKTSHQALESELQQLRARLQGLEANCVRGVDGVCLNWGGDPQDGKATKEQGHKGQEPDPSLLEQHKQLEAEAKALRQELQRQWQLLGSVHWDLQRGLRDAGRGAPAHPGLAELGHMLAQTLQDLENQGINTGRSPNDSEAWHQKKPHTQSPREWGGKEKWRGGQRDQKAEHWKPRKEESGQERQRSWRDEGREHTGRWREDRLRADESGSRKDSKRQDPKVHPRKDGNSHSVERQKHSWGKDNSPDALSSWEELLRRKYRPPQGCSGVADCARQEGLALFGVELAPVRQQELASVLREYLSRLPWAGQLTKQLPLSPAYFGEDGIFRHDRLRFRDFVDALEDSLEEVALKQTGDDDEVDDFEDFVFGHFFGDKALKKRSRKKEKHSWNPRVVGPREEHSRHPHHYHQG
name
type
misc_feature
link
xref
definition
note
: contig AC171273.1 1..225304(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.