VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Jtb (ENSMUSG00000027937)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Jtb
note
: jumping translocation breakpoint [Source:MGI Symbol;Acc:MGI:1346082]
name
Jtb (ENSMUSG00000027937)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000029546
name
Jtb (ENSMUSG00000027937)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000119304
name
Jtb (ENSMUSG00000027937)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17523.1
Uniprot/SWISSPROT:
O88824
RefSeq_peptide:
NP_996807
RefSeq_mRNA:
NM_206924.2
Vega_transcript:
Jtb-001
Vega_transcript:
OTTMUST00000052110
Uniprot/SPTREMBL:
Q542D4
UCSC:uc008qbo.1
Fantom:
E430037I11
EMBL:
AB016490
EMBL:
AK089048
EMBL:
BC008139
EMBL:
CH466547
GO:
GO:0000910
GO:
GO:0000910
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0005739
GO:
GO:0005813
GO:
GO:0005813
GO:
GO:0005819
GO:
GO:0005819
GO:
GO:0007067
GO:
GO:0007067
GO:
GO:0008637
GO:
GO:0016021
GO:
GO:0019901
GO:
GO:0019901
GO:
GO:0030496
GO:
GO:0030496
GO:
GO:0042127
GO:
GO:0045860
GO:
GO:0045860
MGI_trans_name:
Jtb-001
Vega_translation:
187798
Vega_translation:
OTTMUSP00000024644
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0005815
goslim_goa:
GO:0005856
goslim_goa:
GO:0007005
goslim_goa:
GO:0007049
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0008219
goslim_goa:
GO:0019899
goslim_goa:
GO:0043226
goslim_goa:
GO:0051301
protein_id:
AAH08139.1
protein_id:
BAA33733.1
protein_id:
BAC40719.1
protein_id:
EDL15157.1
OTTP:
OTTMUSP00000024644
OTTT:
OTTMUST00000052110
UniParc:
UPI00000018BE
definition
note
: transcript_id=ENSMUST00000029546
protein_id
: ENSMUSP00000029546
translation
: MLAGAGRRGLPRAGHLCWLLCAFTLKLCEAEAPVREEKLSVSTSTSPCWLAEEFVVTEECTPCSNFQIKTTPECGSTGYVEKITCSSSKRNEFKSCRSALLEQHLFWKFEGVVVAVALVFACLVIVRQRQLDRKALEKVRKQIESI
name
Jtb (ENSMUSG00000027937)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Jtb-004
Vega_transcript:
OTTMUST00000078605
Uniprot/SPTREMBL:
D3Z4D1
UCSC:uc008qbo.1
EMBL:
AC119825
GO:
GO:0005737
GO:
GO:0005813
GO:
GO:0005819
GO:
GO:0007067
GO:
GO:0008637
GO:
GO:0016021
GO:
GO:0019901
GO:
GO:0030496
GO:
GO:0045860
MGI_trans_name:
Jtb-004
Vega_translation:
187799
Vega_translation:
OTTMUSP00000041823
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005815
goslim_goa:
GO:0005856
goslim_goa:
GO:0007005
goslim_goa:
GO:0007049
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0008219
goslim_goa:
GO:0019899
goslim_goa:
GO:0043226
OTTP:
OTTMUSP00000041823
OTTT:
OTTMUST00000078605
UniParc:
UPI000173A80A
definition
note
: transcript_id=ENSMUST00000119304
protein_id
: ENSMUSP00000113763
translation
: MLAGAGRRGLPRAGHLCWLLCAFTLKLCEAEAPVREEKLSVSTSTSPCWLAEEFVVTEECTPCSNFQIKTTPECGSTGYVEKITCSSSKRNEFKR
name
type
misc_feature
link
xref
definition
note
: contig AC119825.11 100036..205291(1)
name
Jtb (ENSMUSG00000027937)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000052127
Vega_transcript:
OTTMUST00000052127
MGI_trans_name:
Jtb-002
OTTT:
OTTMUST00000052127
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000157045
name
Jtb (ENSMUSG00000027937)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000052128
Vega_transcript:
OTTMUST00000052128
MGI_trans_name:
Jtb-003
OTTT:
OTTMUST00000052128
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000123839
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.