VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Ilf2 (ENSMUSG00000001016)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Ilf2
note
: interleukin enhancer binding factor 2 [Source:MGI Symbol;Acc:MGI:1915031]
name
Ilf2 (ENSMUSG00000001016)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000001042
name
Ilf2 (ENSMUSG00000001016)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17530.1
Uniprot/SWISSPROT:
Q9CXY6
RefSeq_peptide:
NP_080650
RefSeq_mRNA:
NM_026374.3
Vega_transcript:
Ilf2-002
Vega_transcript:
OTTMUST00000132072
UCSC:uc008qcj.1
Fantom:
3000002D13
Fantom:
6230405A16
Fantom:
6330441H14
Fantom:
F830203K14
EMBL:
AF458249
EMBL:
AK013858
EMBL:
AK031892
EMBL:
AK078003
EMBL:
AK157129
EMBL:
BC004033
EMBL:
BC024718
GO:
GO:0003677
GO:
GO:0003677
GO:
GO:0003725
GO:
GO:0003725
GO:
GO:0005515
GO:
GO:0005524
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005730
GO:
GO:0005730
GO:
GO:0005737
GO:
GO:0006351
GO:
GO:0006351
GO:
GO:0006955
GO:
GO:0016020
GO:
GO:0016020
GO:
GO:0016740
GO:
GO:0030529
GO:
GO:0030529
GO:
GO:0044822
GO:
GO:0044822
GO:
GO:0045893
GO:
GO:0045893
MGI_trans_name:
Ilf2-002
PDB:
4AT7
PDB:
4AT8
PDB:
4AT9
PDB:
4ATB
Vega_translation:
187820
Vega_translation:
OTTMUSP00000070478
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0003723
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005730
goslim_goa:
GO:0005737
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0034641
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH04033.1
protein_id:
AAH24718.1
protein_id:
AAL59388.1
protein_id:
BAB29021.1
protein_id:
BAC27594.1
protein_id:
BAC37097.1
protein_id:
BAE33972.1
OTTP:
OTTMUSP00000070478
OTTT:
OTTMUST00000132072
UniParc:
UPI0000027483
definition
note
: transcript_id=ENSMUST00000001042
protein_id
: ENSMUSP00000001042
translation
: MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE
name
type
misc_feature
link
xref
definition
note
: contig AC160552.13 33294..210051(1)
name
Ilf2 (ENSMUSG00000001016)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000132069
Vega_transcript:
OTTMUST00000132069
MGI_trans_name:
Ilf2-001
OTTT:
OTTMUST00000132069
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000196769
name
Ilf2 (ENSMUSG00000001016)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000132071
Vega_transcript:
OTTMUST00000132071
MGI_trans_name:
Ilf2-004
OTTT:
OTTMUST00000132071
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000198738
name
Ilf2 (ENSMUSG00000001016)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000132073
Vega_transcript:
OTTMUST00000132073
MGI_trans_name:
Ilf2-005
OTTT:
OTTMUST00000132073
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000198325
name
Ilf2 (ENSMUSG00000001016)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000132075
Vega_transcript:
OTTMUST00000132075
MGI_trans_name:
Ilf2-007
OTTT:
OTTMUST00000132075
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000198641
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.