VariantTable
SequenceCutter
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BAC clone ordering.
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name
Cgn (ENSMUSG00000068876)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Cgn
note
: cingulin [Source:MGI Symbol;Acc:MGI:1927237]
name
Cgn (ENSMUSG00000068876)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107272
name
Cgn (ENSMUSG00000068876)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107273
name
Cgn (ENSMUSG00000068876)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide:
NP_001280656
RefSeq_mRNA:
NM_001293727.1
Vega_transcript:
Cgn-002
Vega_transcript:
OTTMUST00000047034
Uniprot/SPTREMBL:
D3YUW7
UCSC:uc008qgz.3
EMBL:
AC150033
EMBL:
AC158989
GO:
GO:0000226
GO:
GO:0003382
GO:
GO:0003774
GO:
GO:0005515
GO:
GO:0005923
GO:
GO:0008017
GO:
GO:0008152
GO:
GO:0016459
GO:
GO:0043296
GO:
GO:0070830
MGI_trans_name:
Cgn-002
Vega_translation:
187991
Vega_translation:
OTTMUSP00000021251
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005856
goslim_goa:
GO:0007010
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0030154
goslim_goa:
GO:0034330
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000021251
OTTT:
OTTMUST00000047034
Reactome:
R-MMU-162582
Reactome:
R-MMU-170834
Reactome:
R-MMU-2173791
UniParc:
UPI0000F2223C
definition
note
: transcript_id=ENSMUST00000107272
protein_id
: ENSMUSP00000102893
translation
: MMADPRGPVDHGVQIRFITEPEGATEMGTLRRSGRRPARDARASTYGVAVRVQGIAGQPFVVLNSGEKGTDSFGVQIKGGNNRGSPGALSSDSELPENPYSQVKGRPATSRSSTSDEEPKDHLNGKLIRSQSQASLTGLAFMSPSNRSTSLLELAPKPTSSINTIDTAPLSSVDSLINKFDSQKGGQVRGRTGRRTRTLPHEQRKRSQSLDSRLPRDTREEREHQSANHWTRGTKYDNHVDSSKNPSQKQSPFSSFSRSRQTQDWVLQSFEETRDPAMVQFKSTPDLLRDQRETAPPGSADHVKATIYGILREGSSESEASVRRKVSLVLEQMQPLGALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEEFDNVYDPSSIASLLTESNLQTSSC
name
Cgn (ENSMUSG00000068876)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS50984.1
RefSeq_peptide:
NP_001032800
RefSeq_mRNA:
NM_001037711.2
RefSeq_mRNA_predicted:
XM_006502061
RefSeq_mRNA_predicted:
XM_006502062
RefSeq_peptide_predicted:
XP_006502124.1
RefSeq_peptide_predicted:
XP_006502125.1
Vega_transcript:
Cgn-001
Vega_transcript:
OTTMUST00000047033
Uniprot/SPTREMBL:
E9QMC1
UCSC:uc008qgy.2
EMBL:
AC150033
EMBL:
AC158989
GO:
GO:0000226
GO:
GO:0003382
GO:
GO:0003774
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005923
GO:
GO:0008017
GO:
GO:0008152
GO:
GO:0016459
GO:
GO:0043296
GO:
GO:0070830
MGI_trans_name:
Cgn-001
Vega_translation:
187992
Vega_translation:
OTTMUSP00000021250
goslim_goa:
GO:0000902
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005856
goslim_goa:
GO:0007010
goslim_goa:
GO:0008092
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0030154
goslim_goa:
GO:0034330
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000021250
OTTT:
OTTMUST00000047033
Reactome:
R-MMU-162582
Reactome:
R-MMU-170834
Reactome:
R-MMU-2173791
UniParc:
UPI00015AA1A5
definition
note
: transcript_id=ENSMUST00000107273
protein_id
: ENSMUSP00000102894
translation
: MMADPRGPVDHGVQIRFITEPEGATEMGTLRRSGRRPARDARASTYGVAVRVQGIAGQPFVVLNSGEKGTDSFGVQIKGGNNRGSPGALSSDSELPENPYSQVKGRPATSRSSTSDEEPKDHLNGKLIRSQSQASLTGLAFMSPSNRSTSLLELAPKPTSSINTIDTAPLSSVDSLINKFDSQKGGQVRGRTGRRTRTLPHEQRKRSQSLDSRLPRDTREEREHQSANHWTRGTKYDNHVDSSKNPSQKQSPFSSFSRSRQTQDWVLQSFEETRDPAMVQFKSTPDLLRDQRETAPPGSADHVKATIYGILREGSSESEASVRRKVSLVLEQMQPLGMVSPASTKALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEEFDNVYDPSSIASLLTESNLQTSSC
name
type
misc_feature
link
xref
definition
note
: contig AC150033.2 68822..179293(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.