VariantTable
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name
Pogz (ENSMUSG00000038902)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Pogz
note
: pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
name
Pogz (ENSMUSG00000038902)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107270
name
Pogz (ENSMUSG00000038902)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107266
name
Pogz (ENSMUSG00000038902)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000042402
name
Pogz (ENSMUSG00000038902)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000107269
name
Pogz (ENSMUSG00000038902)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17596.1
Uniprot/SWISSPROT:
Q8BZH4
RefSeq_peptide:
NP_766271
RefSeq_mRNA:
NM_172683.3
RefSeq_mRNA_predicted:
XM_006501362.1
RefSeq_mRNA_predicted:
XM_011240090.1
RefSeq_mRNA_predicted:
XM_011240091.1
RefSeq_peptide_predicted:
XP_006501425.1
RefSeq_peptide_predicted:
XP_011238392.1
RefSeq_peptide_predicted:
XP_011238393.1
Vega_transcript:
OTTMUST00000047046
Vega_transcript:
Pogz-001
Uniprot/SPTREMBL:
B9EIG6
UCSC:uc008qhc.2
Fantom:
5830440B05
Fantom:
9530006B08
EMBL:
AK030880
EMBL:
AK035255
EMBL:
AK122288
EMBL:
BC032176
EMBL:
BC096492
EMBL:
BC139432
EMBL:
BC139433
EMBL:
CH466620
GO:
GO:0000790
GO:
GO:0000790
GO:
GO:0003677
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0007064
GO:
GO:0007064
GO:
GO:0046872
GO:
GO:0051301
GO:
GO:0051382
GO:
GO:0051382
MGI_trans_name:
Pogz-001
Vega_translation:
187995
Vega_translation:
OTTMUSP00000021253
goslim_goa:
GO:0000228
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0007049
goslim_goa:
GO:0007059
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0051276
goslim_goa:
GO:0051301
goslim_goa:
GO:0065003
protein_id:
AAH32176.1
protein_id:
AAH96492.1
protein_id:
AAI39433.1
protein_id:
AAI39434.1
protein_id:
BAC27169.1
protein_id:
BAC29003.1
protein_id:
BAC65570.1
protein_id:
EDL38753.1
OTTP:
OTTMUSP00000021253
OTTT:
OTTMUST00000047046
UniParc:
UPI00001939FA
definition
note
: transcript_id=ENSMUST00000107270
protein_id
: ENSMUSP00000102891
translation
: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTSVSVSQQPVSAPVPIAAHASVAGHLSTSTTVSNSGAQNSDSTKKTLVTLIANNNAGNTLVQQGGQPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAGQPPGQSNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTVPSLGQSPGPVVVSNNSSAQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDAEPSVPSAAKPSSPEKTAPVTSTPSSTPIPALSPPTKVPEPNENAGDAVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSNDAPSGTLQEAAALTSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSHLRPGQASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQELAGPVLQALPSPASTATPPATPTHPQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAEWVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVIGDSPELVQRSFLVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEETVEPESLHQLFEGESETESFYGFEEADLDLMEI
name
Pogz (ENSMUSG00000038902)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_peptide_predicted:
XP_006501426.1
Vega_transcript:
OTTMUST00000047049
Vega_transcript:
Pogz-004
Uniprot/SPTREMBL:
D3YUX1
UCSC:uc008qhc.2
EMBL:
AC087062
EMBL:
AC087903
GO:
GO:0000790
GO:
GO:0003677
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0007064
GO:
GO:0046872
GO:
GO:0051382
MGI_trans_name:
Pogz-004
Vega_translation:
187996
Vega_translation:
OTTMUSP00000021255
goslim_goa:
GO:0000228
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0007049
goslim_goa:
GO:0007059
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
OTTP:
OTTMUSP00000021255
OTTT:
OTTMUST00000047049
UniParc:
UPI0000F2223E
definition
note
: transcript_id=ENSMUST00000107266
protein_id
: ENSMUSP00000102887
translation
: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTSAGNTLVQQGGQPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAGQPPGQSNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTVPSLGQSPGPVVVSNNSSAQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDAEPSVPSAAKPSSPEKTAPVTSTPSSTPIPALSPPTKVPEPNENAGDAVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSNDAPSGTLQEAAALTSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSHLRPGQASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQELAGPVLQALPSPASTATPPATPTHPQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAEWVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVIGDSPELVQRSFLVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEETVEPESLHQLFEGESETESFYGFEEADLDLMEI
name
Pogz (ENSMUSG00000038902)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS50985.1
RefSeq_peptide:
NP_001159420
RefSeq_mRNA:
NM_001165948.1
Vega_transcript:
OTTMUST00000047047
Vega_transcript:
Pogz-002
Uniprot/SPTREMBL:
Q0VGT3
UCSC:uc008qhd.2
EMBL:
AC087062
EMBL:
AC087903
EMBL:
BC085188
EMBL:
CH466620
GO:
GO:0000790
GO:
GO:0003677
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0007064
GO:
GO:0046872
GO:
GO:0051382
MGI_trans_name:
Pogz-002
Vega_translation:
187997
Vega_translation:
OTTMUSP00000021254
goslim_goa:
GO:0000228
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0007049
goslim_goa:
GO:0007059
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
protein_id:
AAH85188.1
protein_id:
EDL38752.1
OTTP:
OTTMUSP00000021254
OTTT:
OTTMUST00000047047
UniParc:
UPI0000DBE452
definition
note
: transcript_id=ENSMUST00000042402
protein_id
: ENSMUSP00000037523
translation
: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTSVSVSQQPVSAPVPIAAHASVAGHLSTSTTVSNSGAQNSDSTKKTLVTLIANNNAGNTLVQQGGQPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAGQPPGQSNQTSNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTVPSLGQSPGPVVVSNNSSAQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDAEPSVPSAAKPSSPEKTAPVTSTPSSTPIPALSPPTKVPEPNENAGDAVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSNDAPSGTLQEAAALTSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSHLRPGQASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQELAGPVLQALPSPASTATPPATPTHPQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAEWVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVIGDSPELVQRSFLVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEETVEPESLHQLFEGESETESFYGFEEADLDLMEI
name
Pogz (ENSMUSG00000038902)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000055687
Vega_transcript:
Pogz-010
Uniprot/SPTREMBL:
D3YUW8
UCSC:uc008qhc.2
EMBL:
AC087062
EMBL:
AC087903
GO:
GO:0000790
GO:
GO:0003677
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0007064
GO:
GO:0046872
GO:
GO:0051382
MGI_trans_name:
Pogz-010
Vega_translation:
187998
Vega_translation:
OTTMUSP00000026701
goslim_goa:
GO:0000228
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005694
goslim_goa:
GO:0005737
goslim_goa:
GO:0006461
goslim_goa:
GO:0007049
goslim_goa:
GO:0007059
goslim_goa:
GO:0007067
goslim_goa:
GO:0008150
goslim_goa:
GO:0022607
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0051276
goslim_goa:
GO:0065003
OTTP:
OTTMUSP00000026701
OTTT:
OTTMUST00000055687
UniParc:
UPI00015AA1A6
definition
note
: transcript_id=ENSMUST00000107269
protein_id
: ENSMUSP00000102890
translation
: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTSVSVSQQPVSAPVPIAAHASVAGHLSTSTTVSNSGAQNSDSTKKTLVTLIANNNAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAGQPPGQSNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTVPSLGQSPGPVVVSNNSSAQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDAEPSVPSAAKPSSPEKTAPVTSTPSSTPIPALSPPTKVPEPNENAGDAVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSNDAPSGTLQEAAALTSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSHLRPGQASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQELAGPVLQALPSPASTATPPATPTHPQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAEWVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVIGDSPELVQRSFLVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEETVEPESLHQLFEGESETESFYGFEEADLDLMEI
name
type
misc_feature
link
xref
definition
note
: contig AC087903.27 113623..183069(1)
name
Pogz (ENSMUSG00000038902)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000047051
Vega_transcript:
OTTMUST00000047051
MGI_trans_name:
Pogz-006
OTTT:
OTTMUST00000047051
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000107265
name
Pogz (ENSMUSG00000038902)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000047050
Vega_transcript:
OTTMUST00000047050
MGI_trans_name:
Pogz-005
OTTT:
OTTMUST00000047050
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000126235
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.