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name
Otud7b (ENSMUSG00000038495)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Otud7b
note
: OTU domain containing 7B [Source:MGI Symbol;Acc:MGI:2654703]
name
Otud7b (ENSMUSG00000038495)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000090785
name
Otud7b (ENSMUSG00000038495)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000035519
name
Otud7b (ENSMUSG00000038495)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000098849
name
Otud7b (ENSMUSG00000038495)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17629.1
Uniprot/SWISSPROT:
B2RUR8
RefSeq_peptide:
NP_001020784
RefSeq_mRNA:
NM_001025613.1
RefSeq_mRNA_predicted:
XM_006501389.2
RefSeq_mRNA_predicted:
XM_011240097.1
RefSeq_mRNA_predicted:
XM_011240098.1
RefSeq_peptide_predicted:
XP_006501452.1
RefSeq_peptide_predicted:
XP_011238399.1
RefSeq_peptide_predicted:
XP_011238400.1
Vega_transcript:
OTTMUST00000051991
Vega_transcript:
Otud7b-001
UCSC:uc008qma.1
EMBL:
AC092094
EMBL:
BC037040
EMBL:
BC141397
EMBL:
BC141398
EMBL:
CH466620
GO:
GO:0000122
GO:
GO:0000122
GO:
GO:0002385
GO:
GO:0003677
GO:
GO:0004843
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0008234
GO:
GO:0008270
GO:
GO:0016579
GO:
GO:0032717
GO:
GO:0032717
GO:
GO:0035871
GO:
GO:0035871
GO:
GO:0043124
GO:
GO:0043124
GO:
GO:0070530
GO:
GO:0070536
GO:
GO:0070536
GO:
GO:0071108
GO:
GO:1900181
GO:
GO:1900181
GO:
GO:1990380
GO:
GO:1990380
MEROPS:C64.002
MGI_trans_name:
Otud7b-001
Vega_translation:
188163
Vega_translation:
OTTMUSP00000024551
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0032182
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH37040.1
protein_id:
AAI41398.1
protein_id:
AAI41399.1
protein_id:
EDL38862.1
OTTP:
OTTMUSP00000024551
OTTT:
OTTMUST00000051991
UniParc:
UPI00001E35C1
definition
note
: transcript_id=ENSMUST00000090785
protein_id
: ENSMUSP00000088291
translation
: MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDVSAALSDFEQLRQVHAGNLSPPFSGGSTCPKTPEKGGSDREPTRPSRPILQRQDDVIQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSSEHPLEMPICAFQLPDLTVYKEDFRSFIERDLIEQSMLVALEQAGRLNWWVSMDSTCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYALMEKGVEKEALRRRWRWQQTQQNKESGLVYTEDEWQKEWNELIKLASSEPRMHLGSNGASGGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSMEQKESAKEQAVIPLTDSEHKLLPLHFAVDPGKGWEWGKDDNDNVRLASIILSLEVKLHLLHSYMNVKWIPLSSDSQAPLAQPESPTASAGDEPRSTPESGESDKESVGSSSLGNEGSRRKEKSKRDREKDKKRADSVANKLGSFGKTLGSKLKKNMGGLMHSKGPKPGGLGSGSGISSGTETLEKKKKNNTLKSWKGGKEEAAGDGPVSEKPPSESVGNGGSKYSQEVMQSLSTMRIAMQGEGKYIFVGTLKMGHRHQYQEEMIQRYLADAEERFLAEQKQKEVERKIMNGGLVSGPPPAKKPEPDGGEDQPSDSPAEPKAMAFSTAYPGGFTIPRPSGGGVHCQEPRRQLAGGPCVGGLPSYATFPRQYPGRPYPHQDNIPALEPGKDGVHRGALLPPQFRVADSYSNGYREPPEPDGWAGAPRGLPPTQTKCKQPNCSFYGHPETNNLCSCCYREELRRREREPGGELLAHRF
name
Otud7b (ENSMUSG00000038495)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17629.1
Uniprot/SWISSPROT:
B2RUR8
RefSeq_peptide:
NP_001020785
RefSeq_mRNA:
NM_001025614.1
UCSC:uc008qmb.1
EMBL:
AC092094
EMBL:
BC037040
EMBL:
BC141397
EMBL:
BC141398
EMBL:
CH466620
GO:
GO:0000122
GO:
GO:0002385
GO:
GO:0003677
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0008234
GO:
GO:0008270
GO:
GO:0016579
GO:
GO:0032717
GO:
GO:0035871
GO:
GO:0043124
GO:
GO:0070530
GO:
GO:0070536
GO:
GO:0071108
GO:
GO:1900181
GO:
GO:1990380
MEROPS:C64.002
MGI_trans_name:
Otud7b-201
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0032182
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH37040.1
protein_id:
AAI41398.1
protein_id:
AAI41399.1
protein_id:
EDL38862.1
UniParc:
UPI00001E35C1
definition
note
: transcript_id=ENSMUST00000035519
protein_id
: ENSMUSP00000046413
translation
: MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDVSAALSDFEQLRQVHAGNLSPPFSGGSTCPKTPEKGGSDREPTRPSRPILQRQDDVIQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSSEHPLEMPICAFQLPDLTVYKEDFRSFIERDLIEQSMLVALEQAGRLNWWVSMDSTCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYALMEKGVEKEALRRRWRWQQTQQNKESGLVYTEDEWQKEWNELIKLASSEPRMHLGSNGASGGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSMEQKESAKEQAVIPLTDSEHKLLPLHFAVDPGKGWEWGKDDNDNVRLASIILSLEVKLHLLHSYMNVKWIPLSSDSQAPLAQPESPTASAGDEPRSTPESGESDKESVGSSSLGNEGSRRKEKSKRDREKDKKRADSVANKLGSFGKTLGSKLKKNMGGLMHSKGPKPGGLGSGSGISSGTETLEKKKKNNTLKSWKGGKEEAAGDGPVSEKPPSESVGNGGSKYSQEVMQSLSTMRIAMQGEGKYIFVGTLKMGHRHQYQEEMIQRYLADAEERFLAEQKQKEVERKIMNGGLVSGPPPAKKPEPDGGEDQPSDSPAEPKAMAFSTAYPGGFTIPRPSGGGVHCQEPRRQLAGGPCVGGLPSYATFPRQYPGRPYPHQDNIPALEPGKDGVHRGALLPPQFRVADSYSNGYREPPEPDGWAGAPRGLPPTQTKCKQPNCSFYGHPETNNLCSCCYREELRRREREPGGELLAHRF
name
Otud7b (ENSMUSG00000038495)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17629.1
Uniprot/SWISSPROT:
B2RUR8
RefSeq_mRNA_predicted:
XM_006501385.2
RefSeq_mRNA_predicted:
XM_006501386.2
RefSeq_mRNA_predicted:
XM_011240099.1
RefSeq_peptide_predicted:
XP_006501448.1
RefSeq_peptide_predicted:
XP_006501449.1
RefSeq_peptide_predicted:
XP_011238401.1
Vega_transcript:
OTTMUST00000051992
Vega_transcript:
Otud7b-002
UCSC:uc008qmc.1
EMBL:
AC092094
EMBL:
BC037040
EMBL:
BC141397
EMBL:
BC141398
EMBL:
CH466620
GO:
GO:0000122
GO:
GO:0002385
GO:
GO:0003677
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005737
GO:
GO:0008234
GO:
GO:0008270
GO:
GO:0016579
GO:
GO:0032717
GO:
GO:0035871
GO:
GO:0043124
GO:
GO:0070530
GO:
GO:0070536
GO:
GO:0071108
GO:
GO:1900181
GO:
GO:1990380
MEROPS:C64.002
MGI_trans_name:
Otud7b-002
Vega_translation:
188164
Vega_translation:
OTTMUSP00000024552
goslim_goa:
GO:0002376
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0032182
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
protein_id:
AAH37040.1
protein_id:
AAI41398.1
protein_id:
AAI41399.1
protein_id:
EDL38862.1
OTTP:
OTTMUSP00000024552
OTTT:
OTTMUST00000051992
UniParc:
UPI00001E35C1
definition
note
: transcript_id=ENSMUST00000098849
protein_id
: ENSMUSP00000096449
translation
: MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDVSAALSDFEQLRQVHAGNLSPPFSGGSTCPKTPEKGGSDREPTRPSRPILQRQDDVIQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSSEHPLEMPICAFQLPDLTVYKEDFRSFIERDLIEQSMLVALEQAGRLNWWVSMDSTCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYALMEKGVEKEALRRRWRWQQTQQNKESGLVYTEDEWQKEWNELIKLASSEPRMHLGSNGASGGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSMEQKESAKEQAVIPLTDSEHKLLPLHFAVDPGKGWEWGKDDNDNVRLASIILSLEVKLHLLHSYMNVKWIPLSSDSQAPLAQPESPTASAGDEPRSTPESGESDKESVGSSSLGNEGSRRKEKSKRDREKDKKRADSVANKLGSFGKTLGSKLKKNMGGLMHSKGPKPGGLGSGSGISSGTETLEKKKKNNTLKSWKGGKEEAAGDGPVSEKPPSESVGNGGSKYSQEVMQSLSTMRIAMQGEGKYIFVGTLKMGHRHQYQEEMIQRYLADAEERFLAEQKQKEVERKIMNGGLVSGPPPAKKPEPDGGEDQPSDSPAEPKAMAFSTAYPGGFTIPRPSGGGVHCQEPRRQLAGGPCVGGLPSYATFPRQYPGRPYPHQDNIPALEPGKDGVHRGALLPPQFRVADSYSNGYREPPEPDGWAGAPRGLPPTQTKCKQPNCSFYGHPETNNLCSCCYREELRRREREPGGELLAHRF
name
type
misc_feature
link
xref
definition
note
: contig AC092094.19 1..103083(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.